Pseudomonas kribbensis: DLD99_20030
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Entry
DLD99_20030 CDS
T06348
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pke
Pseudomonas kribbensis
Pathway
pke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DLD99_20030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pke03019
]
DLD99_20030
03009 Ribosome biogenesis [BR:
pke03009
]
DLD99_20030
Enzymes [BR:
pke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DLD99_20030
Messenger RNA biogenesis [BR:
pke03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DLD99_20030
Ribosome biogenesis [BR:
pke03009
]
Prokaryotic type
rRNA helicases
DLD99_20030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AXI62667
UniProt:
A0A345RTQ1
LinkDB
All DBs
Position
complement(4409400..4411073)
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AA seq
557 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLQTVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALNLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPMPLGEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcgatcccgatcatc
ctcgccggtcacgatatgattggtcaggcgcaaaccggtaccggtaaaaccgctgccttt
gccctgcctatcctgcaccgcattgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaactcgtgagttggcgctacaagttgcaaccgctttcgaaacctacgccaagcaa
atgccgggcgtaactgttgtggctgtctacggcggcgcgccgatgggcccacaattgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccatctg
cgtcgcgacgaaaaagtgctgcagaccgtgaaccacctggttctcgacgaagcagacgaa
atgctcaaactgggcttcatggacgacctcgaagtcatcttcaaggccatgccggaaacc
cgtcagaccgtattgttctcggcgaccctgccgcaatcgatccgtgccatcgccgagcgt
cacctgcgcgatccaaagcacgtgaagattcagagcaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacttctgccgttctcagcctgctg
gaagtggaagacttcgacgctctgatcatgttcgtgcgcaccaagcaagcgaccctggat
ctggccagcgccctcgacgccaaaggctacaaagccgcagcgttgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgactcgctgaaagatggccgtctggacatcgttgtg
gcgaccgacgttgccgcccgtggtctggacgttccgcgcatcacccacgtattcaacgtg
gacatgccgtacgatccggaatcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgcgcgctgctgctggtgactccgcgtgagcgccgcatgctgcaggtgatc
gagcgtgtgaccggtcagaaagttgccgaagtgcgtctgccggacgcccaggccgttctc
gatgcccgcatcaagaaactgaccaacagcctgtcgccgctggtggctgacgccgaatcg
actcacggtgatctgctggatcgcctgactgccgacatcggttgcaccccgcgtgccctg
gctgccgctctgctgcgcaaggccaccaatggtcaggcgctgaacctggcagcgatcgag
aaggaacgtccactggtgccgaacagcgctccacgtggtgaccgtcctgagcgttccggt
gatcgtccggaccgtggtgatcgcgagcgtcgtgcgccaatgccgctgggcgaaggccgt
gcccgttgccgtaccgcgctgggcgcgcgtgacggtatcgcggcgaaaaacctgctgggc
gccatcctcaatgaaggtggtctggcgcgtgaagccatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgagttgccggaagatggtctggacaagctcctgaccaagctgaag
gacactcgcgttgccggcaagcagttgaagctgcgtcgctaccgcgaagattga
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