Pseudomonas kribbensis: DLD99_25110
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Entry
DLD99_25110 CDS
T06348
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pke
Pseudomonas kribbensis
Brite
KEGG Orthology (KO) [BR:
pke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pke03019
]
DLD99_25110 (hrpB)
Enzymes [BR:
pke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DLD99_25110 (hrpB)
Messenger RNA biogenesis [BR:
pke03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DLD99_25110 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
ResIII
AAA_30
Flavi_DEAD
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AXI63615
UniProt:
A0A345RWE9
LinkDB
All DBs
Position
complement(5493975..5496494)
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AA seq
839 aa
AA seq
DB search
MISLPIDDVLPALREALATRHEAVLEAPPGAGKTTRVPLALLNEAWLNGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALEGVGL
LIFDEFHERSLDADLALALSLNGRELFRAEQPLKILLMSATLEGERLAGLLDDAPILRSE
GRMFPVTMRWGRPFQPGEYIDQRVTQTVLEALHDETGSLLVFLPGQAEIRRVHQQLSDAI
GERSDVLLCPLHGELDLNAQRAAIDPAPAGQRKVVLATNIAETSLTINGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISKASATQRAGRAGRLEPGVCYRLWSQDQHEQLATYGSAEILS
ADLAGLALQLGRWGVAPSDLIWLDVPPAAAYAQAQDLLQRLGALEGESLNRHGQAMAELP
AHPRIAHLLLRGQALGLATMACDVAALLGERDILRGAGADLHSRLVLLSGEERAARGAQG
GVQRARQLARQYRGYLRGKASEPVSDPDHPRWLGALLALAYPDRVAQQRRAGGAEYRLAN
GRAALFAEADSLMKEPWIVIADLGSRQGQREERIYLAADFDPALFDSVLAEQVHNVDQLD
WDEREGVLRAERQRKVGELILSREPLTGLDENARSQALVNLVRRKGLELLPWTPELRQWQ
ARVALLRQLDLDAKGDSQWPDVSDATLLKTLEDWLMPYLGKVSRLSHFANLDLSSIVRNL
LPWPLPQQLDEQAPHHLSVPSGSSIRLDYSEQPPILAVRLQELFGLADTPRIAGGRQVVK
LHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAEATARAKPRGT
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgatttctttgccgatcgatgacgttttacccgccctgcgtgaagccctcgcgacacgc
cacgaagccgtgctcgaagcaccgcccggcgccggtaaaaccacccgcgtgcccttggcc
ttgctcaatgaagcgtggctgaacgggcagaccattctcatgctcgagccccgtcggctg
gcggcgcgcgcagcagcggaacggctggccagcgagctgggcgagaaggtcggtgaaacc
gtcggttatcgcattcgcctcgacagcaaggtcggccccaatacacgcatcgaagtggtc
accgaaggcattctcacccggcgtttgcaggacgacccggcgctggaaggcgtgggcctg
ctgatcttcgacgaatttcacgaacgcagcctcgacgccgatctggcgctggccctcagt
ctgaacggtcgcgaactgtttcgagctgaacaaccgctgaagattctgctgatgtccgcc
accctcgaaggcgaacgtctggccggtttgctcgacgatgcaccgatcctgcgcagcgaa
ggccggatgttcccggtgacgatgcgctggggccggccgttccagcccggcgaatacatc
gatcagcgcgtcacgcaaacggtgctcgaagccctgcacgatgaaaccggcagcctgttg
gtgttcctgccggggcaagcggaaatccgccgtgtccatcagcaactgtcggatgccatc
ggtgagcgcagcgacgtgttgctctgcccgttgcacggcgaactcgacctgaatgcccaa
cgtgccgccatcgatccggccccggcgggccagcgcaaagtggtgctggccaccaacatc
gccgagaccagcctgaccatcaacggcgtgcgcgtggtgatcgatgccgggctggcgcgg
gtgccgcgtttcgacccgggcagcggcatgacccgcctcgacactcaacggatctccaaa
gccagtgcgacccagcgtgcaggccgggccgggcgtctcgaaccgggcgtgtgttatcgc
ctgtggtcgcaggatcagcacgaacaactcgcgacttatggcagtgcggaaattctgtcg
gcggatctcgccggccttgccttgcaactcgggcgctggggcgtggcgccgagtgatctg
atctggctggacgtgccgccagcggccgcttatgcacaggctcaagacttgttgcagcgc
ctcggtgcgctggagggcgaaagccttaaccgccacggtcaggccatggctgagttgccc
gcgcatccgcgtatcgcgcatttactgctgcgcggtcaggcgttggggctggcgaccatg
gcgtgcgatgtcgccgcgttactcggtgagcgcgacattttgcgcggcgccggggcggat
ctgcacagtcgtctggtgctgctgtccggtgaagaacgtgcggcgcgcggagctcaaggc
ggcgtgcagcgtgcccggcaactggcgcggcaatatcgtggttaccttcgcggcaaggcg
agcgagccggtcagcgatccagatcacccgcgctggctcggtgcgctgctggcactggcc
tacccggaccgcgtcgcccagcagcggcgtgccggtggtgccgaatatcgtctggccaat
ggccgagcggcgttgttcgccgaagccgacagcctgatgaaggaaccatggatcgtcatc
gccgacctcggcagccgtcagggccagcgcgaagagcggatttatctggcggcggatttc
gatccggcgctgttcgattcggtgctggccgagcaggtgcacaacgtcgatcaactcgac
tgggacgagcgcgaaggcgtgttgcgcgccgagcgtcagcgcaaggtcggcgaactgatc
ctcagccgcgaaccgctgaccggtctcgacgaaaacgcccgcagtcaggcactggtcaat
ctggtgcggcgcaaaggtctggagctgctgccgtggactccggaactacgccagtggcag
gcgcgagtcgccttattgcgccagctcgatctggacgccaagggcgacagccaatggccg
gatgtcagtgacgccacgttgctgaaaaccctcgaagactggctgatgccgtacctgggc
aaagtctcgcgcctcagccatttcgccaacctcgacctgtcgagcatcgtgcgtaatctg
ctgccgtggccgctgccacagcaactcgatgaacaggcaccgcatcacctgagcgtgccg
tcgggctcgtcgattcgcctcgactacagcgaacagccaccgattctcgccgtgcgcttg
caggagttgttcggcctcgccgacacaccgcgcatcgctggcggccggcaagtggtcaag
ttgcatctgctgtcgcccgcacggcgtccggtgcaggtgacgcaggatctggccaacttc
tggcgcagcacctatgccgaggtgaagaaggatttgaaggggcggtatccaaagcattat
tggccggatgatccgctggtggctgaagccactgcgcgggctaaaccgcgaggtacgtga
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