Paraburkholderia kirstenboschensis: RW095_03005
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Entry
RW095_03005 CDS
T09457
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pkf
Paraburkholderia kirstenboschensis
Pathway
pkf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pkf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RW095_03005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkf03400
]
RW095_03005
Enzymes [BR:
pkf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RW095_03005
DNA repair and recombination proteins [BR:
pkf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RW095_03005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
HHH_5
Viral_helicase1
AAA_11
PIF1
Helicase_RecD
NTPase_1
nSTAND3
AAA_16
AAA_22
NPHP3_N
RsgA_GTPase
Herpes_Helicase
TrwB_AAD_bind
AAA_29
SLFN-g3_helicase
DEAD
UvrD-helicase
T2SSE
NACHT
HHH_2
AAA
MeaB
AAA_28
ABC_tran
Mg_chelatase
AAA_23
cobW
ATP_bind_1
TsaE
HHH
AAA_24
AAA_5
AAA_12
Motif
Other DBs
NCBI-ProteinID:
WOD14456
LinkDB
All DBs
Position
3:591482..593668
Genome browser
AA seq
728 aa
AA seq
DB search
MYDLTVLLRQNQPDRLAGLVERVTFHNADSGFCVLRLKVKGERELITLVGHTPTVAPGEY
ASASGTWVTDREHGRQFKAVFVRISPPNTLNGIERYLGSGMVKGIGPVYAGRLVKAFGAA
VFDIIEQTPERLREVEGIGAIRARKITSGWADQKIIREIMVFLHGNGVSTSRAVRIFKTY
GQAAIAIVTENPYRLARDIRGIGFLSADTIAQKIGIAHDSPLRARAGVSYALSEAAGEGH
CGLPRSQLVSLAVKLLEIPQPIVEDAIDQELAEEIVIADTVDGVPSVFLAQLYNAERSIV
SQVQRLESGSPPWTAFDADKAIPWVEQKLAIQLADSQKQAIRLALSSKLLVITGGPGVGK
TTLVNSILTILRAKQVKALLCAPTGRAAKRLSESTGLEAKTIHRLLEVNPANGQFKRNEE
SPLECDLLVADECSMVDVPLANQLLKAVASTTAVIFVGDVDQLPSVGPGQVLADLIESGA
VPVVRLTEVFRQAATSRIVRSAHQINQGLFPSLPEKGEESDFYFVPADEPEAIAQTVVDL
VKTRLPRKFQLDPVRDIQVLCPMNRSLTGARGINQMLQEALNPPGEHSIEKFGYRFSVAD
KVMQIENNYDKDVYNGDIGFVTHIDAEEQELTATFDEHIVTYAFGELDELVLCYATTIHK
SQGSEYPVVVIPVSTQHYMMLKRNLIYTGITRGKRLVVLVGQKRALAIAVKGKQTERRWS
KLAEWLSP
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
ttgtacgacttaaccgtcttactgcgacagaaccaaccagatcggctcgcgggactcgtc
gagcgcgttacgttccacaacgccgatagcggcttctgcgtcctgcggctgaaggtcaag
ggcgagcgtgaactcatcaccctggtcgggcacaccccgaccgtagcgccaggcgagtac
gcctcagcgtcgggtacatgggtcacggatcgagagcacggcaggcagttcaaggcagtc
ttcgtcaggatttcgccaccgaacacgctgaacggcattgagcgctacctcggctccggg
atggtcaagggtattggtccggtgtacgccggtcggctggtcaaggccttcggtgccgcc
gtattcgacatcatcgagcagacaccggaacggcttcgggaggtcgaggggattggtgcg
atacgtgcccgaaagatcacctcgggctgggctgaccagaagatcatccgcgagatcatg
gtcttcctgcatggcaacggcgtttcgacgtcccgcgccgtgcggattttcaagacctat
ggccaggccgccattgctatcgtcacggaaaatccttaccggttggcccgggacattcgt
ggcatcgggttcctgtcggccgataccatcgcgcagaagatcggtatcgcacatgactcc
ccgctgcgtgcgcgggccggcgtctcctacgcgttgtccgaagcggccggagaaggtcac
tgcggcttgccgcggagccagctcgtgtcgcttgccgtgaagctgctcgaaatcccgcaa
cccatcgtcgaggatgcgatcgaccaggaactggcagaggaaatcgtgatcgccgatacc
gttgacggcgttcccagcgttttcctcgcgcagctgtacaacgccgagcgttccatcgtc
tcgcaggtgcagcgcctggagtctggatcgccgccatggaccgcatttgacgccgacaag
gcaataccgtgggttgagcaaaaacttgcgatccagcttgccgatagccagaagcaggcg
atccgtctggctctctcgtcaaagctgctggtcatcaccggcgggcctggcgtcgggaag
acgacactggtcaattcgatactgacgatcctgcgtgcaaaacaggtgaaggcgctgttg
tgcgccccaaccggacgggcggccaagcggttgtcggaatcgaccgggctagaagcgaag
acgatccaccggctgcttgaagtcaatccagccaatgggcaattcaagcgcaacgaggag
tcgccgctcgaatgtgatctgctggtggccgacgagtgctcgatggtggacgtgccgctg
gcaaaccagttgctgaaggcggtggcgagcaccactgccgtgatcttcgtcggggacgtg
gatcagctgccctcggttggcccgggacaggtcctcgcggatctgatcgagtcgggcgcg
gtgcctgtcgtgcgcctgaccgaagtgttccggcaggccgccacgtcacgcatcgtccgg
agcgcccaccagatcaatcaggggctgttcccgtcccttccggaaaaaggcgaagagtca
gatttctatttcgtgccggccgacgaacccgaggcgattgcccagaccgtcgtagatctg
gtcaagacccggttacccagaaaattccagctggatcccgtgcgcgatattcaggtgctg
tgcccgatgaaccgcagtctcaccggtgctcgcggcatcaaccagatgttgcaggaggcg
ctgaacccgccgggcgaacacagtatcgagaagttcggctatcgcttcagcgtcgccgac
aaggtcatgcagatcgagaacaactacgacaaggatgtctataacggcgacattggattt
gtgacccacatcgacgctgaagagcaggagctcacagcgacctttgatgagcacatcgta
acctacgcatttggcgaactggatgagctggtcctgtgttacgcgacgaccatccacaaa
tcccagggatcggaatatccggttgtggtgattcccgtctcgacccagcactacatgatg
ctcaagcgcaacctgatctacaccggcatcacgcgaggcaagcgcctcgttgtactggtc
gggcagaagcgtgcgctggcgattgcggtcaagggcaagcagacggaacgtcgctggtcg
aagctcgccgaatggttatcgccgtaa
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