Paraburkholderia kirstenboschensis: RW095_20885
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Entry
RW095_20885 CDS
T09457
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pkf
Paraburkholderia kirstenboschensis
Pathway
pkf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pkf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
RW095_20885
09124 Replication and repair
03420 Nucleotide excision repair
RW095_20885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkf03021
]
RW095_20885
03036 Chromosome and associated proteins [BR:
pkf03036
]
RW095_20885
03400 DNA repair and recombination proteins [BR:
pkf03400
]
RW095_20885
Enzymes [BR:
pkf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
RW095_20885
Transcription machinery [BR:
pkf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
RW095_20885
Chromosome and associated proteins [BR:
pkf03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
RW095_20885
DNA repair and recombination proteins [BR:
pkf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
RW095_20885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
Motif
Other DBs
NCBI-ProteinID:
WOD15708
LinkDB
All DBs
Position
2:2649937..2652201
Genome browser
AA seq
754 aa
AA seq
DB search
MSYVVAVRAMCEFTARRGDLDLRFTPAPTSLEGMAGHVTVAGRRTSGYETEITLTGTHRN
LTVRGRADGYDPVAHRLEEVKTHRGDLERMPDNHRALHWAQALVYGHLLCRARGFNELTV
GLVYFDIGSQKETLLTQTHTARELEIFFVDQCERFLDWSVQEEAHRFARNAALNALQFPH
AQFRCGQRELAVSVYRAARDGKPLMAQAPTGIGKTLATIFPLLKACATEQIDRVIFLTAK
TPGRALALDAIETLRRSAGTLPLRTLELVARDKACEHPDKACNGESCPLARGFYDRLDAA
RSTALAGQRLDRAAVREAALAHDVCPYYLGQELARWADVVVGDYNYYYDSSAMLYALTQI
NQWRIGVLVDEAHNLLDRARRMYTASLDQAALRLARKTAPPSLRKPLERLQREWNAVKRA
QTASYQVYADVPGKLLSAAQNLIGAVTDQLAEAPLSFDEASLRFFFDAMHFVALAEQFGE
HSIFDITLTTDGHAPRDKTSCTLCVRNVIPAPFLAPRYAAARTTVMFSGTLSPHHFYRDT
LGLAQETQWLDVEGPFRAEQLQVRVAGNVSTRWRDRERSLEPIVDLIAKQYTAQPGNYLG
FLSSFDYLQQVVALMRERHPGLPVWAQEPGMDEAARDAFLARFRSANRGIGFAVLGGAFS
EGVDLVGQQLIGAFIATLGLPQMNEVNEQMRRTMDARFGNGYEYMYLYPGLQKVVQAAGR
VIRTELDEGVVHLIDDRYRRPEVRRLLPRWWQVR
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgagctacgtcgttgccgtgcgagccatgtgcgagttcaccgcgcgacgcggcgacctc
gatctgcgattcacacccgcgccaacctcgctggaaggcatggcgggccacgtcacggtc
gcgggccgccgtacaagcggctacgaaaccgaaatcacgctgaccggtacgcatcgcaat
ctcaccgtgcggggccgtgcggacggctacgatccggtggcgcaccgcctggaagaggtc
aagacgcatcgtggcgatctcgagcgcatgcctgacaatcaccgcgcgctacattgggcg
caggcgctggtgtacggacatttgctgtgccgcgcacgcgggttcaacgagttgaccgtc
gggctggtttacttcgacatcggcagtcagaaggaaacgttgctcacgcaaacgcatacc
gcgcgcgaactggagatattttttgtcgaccaatgcgagcggtttctggattggtccgtg
caggaggaggcgcatcgtttcgcgcgcaacgccgcgctcaacgcgttgcagtttccgcat
gcgcagtttcgctgcgggcagcgcgagctggcggtgtcggtctaccgcgcggcgcgcgac
ggcaagccgctgatggcgcaggcgccaaccggcatcggtaagacactcgccacgatcttt
ccgttgttgaaggcgtgcgcgacggagcagatcgatcgcgtgatttttctgaccgcgaaa
acgcctggccgtgcgctcgcgctcgacgcgatcgaaacgcttcgccggagcgcggggact
ttaccgttgagaacgcttgaactggtggcacgcgacaaagcctgtgagcatcccgacaaa
gcgtgcaacggcgagtcctgtccgctcgcgcgcggcttctatgaccggctcgacgcggcg
cgaagcacggcgctcgcgggccagaggctcgatcgcgccgcggtgcgcgaagcggcgctc
gcgcatgacgtgtgcccctattatctgggccaggaactcgcgcgctgggccgacgtcgtg
gtgggcgactacaactactactacgacagcagcgcaatgctctacgcgctcacgcagatc
aaccagtggcgcatcggcgtactggtggacgaagcgcataacctgctcgaccgtgcgcgc
cgcatgtacacggcgtcgctcgatcaggcggcgttgcggctcgcgcgcaagacggcgccg
cccagcttgcgcaagccgctcgaacggttgcagcgcgaatggaatgcggtcaagcgcgcg
caaaccgcgtcgtatcaggtctatgcggacgtgcccggcaagctgctctcggccgcgcaa
aatctgattggcgcggtgacggatcagctggcggaagcgccgctctcgttcgacgaggcg
tcgctgcgctttttcttcgacgcgatgcatttcgtcgcgctcgcggagcagttcggcgag
cattcgattttcgacatcacgctgacaacagacggccacgcaccacgcgacaagaccagt
tgcacgctatgcgtgcgcaatgtgattcccgctccgtttctcgcgccgcgttatgcggcg
gcgcgcacgaccgtcatgttttcgggcacgcttagtccgcatcatttttaccgcgatacg
ttgggtcttgcgcaggagacgcaatggctcgacgtcgaagggccgtttcgcgcggagcag
ctacaggtgcgtgtagccgggaacgtgtcgacgcgctggcgcgatcgcgaacgttcgctc
gaacccatcgtcgatctgatcgcaaagcagtacacggcgcaacccggcaattacctgggg
ttcctgagcagtttcgattacctgcaacaggtggtcgcgctgatgcgcgagcgtcatccc
ggactgccggtctgggcgcaggaaccgggcatggacgaagcggcccgcgacgcgtttctc
gcgcggtttcgtagcgcgaaccggggcatcggctttgcggtgcttggcggcgccttttcg
gaaggtgtcgatctggtcgggcagcagctgatcggcgccttcatcgcgacgttgggcctg
ccgcaaatgaacgaagtcaacgaacagatgcggcgcacgatggacgcgcgttttggcaac
ggctacgaatacatgtacctgtaccccggtttgcaaaaggtggtgcaggcggcggggcgc
gtgatccgcaccgaactcgacgagggcgtcgtgcatctgatcgacgaccggtacaggcgg
ccagaggtgcgccgcctgttgcctcggtggtggcaggtccggtaa
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