Paraburkholderia kirstenboschensis: RW095_25090
Help
Entry
RW095_25090 CDS
T09457
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pkf
Paraburkholderia kirstenboschensis
Brite
KEGG Orthology (KO) [BR:
pkf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkf03019
]
RW095_25090 (hrpA)
Enzymes [BR:
pkf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RW095_25090 (hrpA)
Messenger RNA biogenesis [BR:
pkf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RW095_25090 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
AAA_30
AAA_23
TsaE
PhoH
Myosin_head
acVLRF1
Motif
Other DBs
NCBI-ProteinID:
WOD19513
LinkDB
All DBs
Position
1:539057..543445
Genome browser
AA seq
1462 aa
AA seq
DB search
MSNVPKSPAAANENAAPAADQANSGDAKRRPEKDANRGNPDAPRKARVPHRAGEGAQASS
NEKNPSRTVKDVERGEQRGKTRDGAESREPGEQRRQRDQRDQRGQRERPEADKPPRQQPP
REPRAAREPRVVQPNPVPPITFPEALPVSGRRDEIAKAIAENQVVIVSGETGSGKTTQLP
KICLALGRGLGAGGSGLIGHTQPRRIAASATGRRIAEELGTPFGEVVGYKVRFTDNLSPG
ASVKLMTDGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLKEILVKRPDLKLIV
TSATIDADRFARHFGSEEKPAPVIEVSGRLYPVEVRYRPIDEDSPAVKAAQGTSGTSGGS
ASRERAKTQRETGKERDRDLMEAIVDAVDELCREGPGDVLVFLPGEREIRDAAEALRKHH
PPHTEILPLFARLSAADQERVFRTSNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRY
SYRNKVEQLQVESISQAAANQRAGRCGRVADGICIRLYDESDYQSRVRFTDPEILRSSLA
SVILRMKSLHLTAIETFPFIEPPPGRAIADGYQLLNELGAVDDDNQLTPLGRELARLPLD
PRVGRMILAARDQQSLKEVLIIASALSVQDPRDRPIEAQEQADQAHRRFADERSEFLQWL
KIWNWFEEAIAHKKSNKQLHEECRKNFLSQLRLREWRDVHSQLLTVVREHGWRLNEAEAT
FEQVHLALLTGLLGNIGLKADDEPYYLGARGIKFYLWPGSALVKKAGKWVMAAELVETSR
LYARCIAKIEPEWIEKIGAHLLKKSLSEPHWEKRAAQVSAFERAVLYGLPIYNRRRVSFG
KQDPARARELFIRGALVEGEFDTKLGFFAHNRKLLADIEQLEHKSRRQDVLVDDELIFAF
YDQALPKGIYTGASFERWYRDELKKSGQPEDKLRLLYLSRDDLMRHEAAGVTTDLFPKRM
TMAGVEMALTYHFEPGSPRDGVTLAVPLYALNQVDARRCEWLVPGMLKEKTQLLLKSLPQ
KLRRHCVPLPEYAAGFVDRHGAPRFGAGGLLEALIADIREQKQLMLKQSDFKLETLPPHL
FMNFKVVDEHGRQLAMGRNLSQLRAELGGQAQQHFQKIASSAAGAALADAAGSRADGAAV
AGAPRTAPASSGPAQRGKGAAAPVPQTPLQGSAGGGSTALYENLTTWNFGKLPELLEIRR
GGQTLFGYPALVDRGTHCDVEVFDSPDEAARIHRAGLRRLFALQLKEPIKYLEKNLPGLR
EMAMQFMTRGTQEELRDQLIDTALDRACLQDPLPDDDVSFHTRRDEGRSRLTLLAQEIAR
LVGQILGEYASVLKKLAQAKSFTAAHADMQNQLDALIGKRFVVDTPYSQLTHFPRYLKGI
ALRIDKLKADPARDARQFAEFQPLLQNYQRAVAQRGGVPDARLSEFRWLLEELRVSLFAQ
ELRTPMPVSVKRLHKVWDSMQR
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacccaaaagtcccgccgcggcgaacgagaatgcggcgccggccgccgat
caggcgaactccggcgacgcgaagcgccgccccgaaaaggacgcgaaccgcggcaacccg
gacgcgcctcgcaaggcgcgcgtgccgcatcgtgccggcgaaggcgcgcaggcgtcttcg
aacgagaagaatccgtcgcgcacggtgaaggatgtcgagcgcggtgagcagcggggcaag
acgcgtgacggagctgaatcgcgcgaaccgggcgaacaacgcagacaacgcgaccaacgc
gaccaacgcgggcagcgcgagcggccggaggctgacaagccaccgcgccagcaaccgcct
cgcgaaccgcgcgccgcacgtgaaccgcgcgtcgtccagccgaatcccgttccgccgatc
accttccccgaagcgctgccggtctccggccgtcgcgacgaaatcgccaaggcgatcgcc
gaaaaccaggtagtgatcgtgtccggtgaaaccggctcgggcaagaccacgcagttgccg
aaaatctgcctcgcgctagggcgcggcctcggcgcgggcggctcggggttgatcggccac
acgcagccgcgccgcattgccgcttcggcgacgggccggcgcatcgctgaggagcttggc
acgcctttcggcgaagtggtcggctacaaggtgcgtttcaccgacaatctgtcgccgggc
gcatccgtcaagctgatgacggacggtattctcctcgccgaaacgcagaccgatccgctg
ctcaaagcgtatgacacgctgatcatcgacgaggcgcatgagcgcagtctgaacatcgac
ttcttgctcggctacctgaaggaaattctggtcaagcgtcccgatctgaagctgatcgtg
acgtcggcgacgatcgatgccgatcgtttcgcgcgccacttcggcagcgaggaaaagccc
gcgccggtaatcgaagtgagcgggcggctgtatccagtcgaggtgcgctaccgtccgatc
gacgaggacagccccgctgtgaaagcggcgcagggtacgtcaggcacatcgggcggttcg
gcgtcgcgtgaacgtgcgaagactcagcgcgagaccggcaaggagcgcgaccgcgatctg
atggaagcgatcgtcgacgccgtcgatgagctgtgccgcgaaggtcccggcgacgtgctg
gtgtttctgcccggcgagcgtgaaatccgcgatgccgccgaggcgctgcgcaagcatcat
ccgccgcataccgaaatcctgccgctgttcgcgcgcctctcggcggccgaccaggaacgc
gtgttccgcacttccaacgcgcggcgcatcgtcctcgcgacgaacgtggcggaaacgtcg
ctcacggtgccgggcattcgctatgtggtcgatacgggcctcgcgcgcgtgaagcgctat
tcgtatcgcaacaaggtcgagcagttgcaggtcgagtcgatctcgcaggccgccgcgaat
cagcgggcagggcgctgcggacgggtggccgacggcatctgcattcgcctgtatgacgag
agcgattaccagagccgcgtgcgctttaccgatccggagattctgcgctcgtcgctcgcg
tcggtcattctgcgcatgaagtcgctgcatctgacggcgatcgagacgtttccgtttatc
gaaccgccgccgggccgcgcgatcgccgacggttatcaactgctgaacgagctcggcgcc
gtcgacgacgacaatcagctcacgccgctcggccgcgaactcgcgcgtctgccgctcgac
ccgcgcgtcggccggatgattctcgccgcgcgcgatcagcaatcgctgaaggaggtgctg
atcatcgcgagcgcgttgtcggtgcaggatccccgcgaccggccgatcgaggcgcaggaa
caggccgaccaggcgcatcgccgctttgccgacgaacgctcggaattcctccagtggctg
aaaatctggaactggttcgaagaagcgatcgcgcacaagaagtcgaacaagcaattgcac
gaggaatgccggaagaatttcctgtcgcaattgcgtctgcgcgaatggcgcgacgttcat
tcgcagctgctgacggtggtgcgtgaacacggctggcgtctgaacgaagctgaagcgacc
ttcgagcaggtccatctcgcgcttctcacgggcctcttgggcaacatcggactgaaagcc
gacgacgagccgtactacctcggcgcacgcggcatcaagttctatttatggccgggctcc
gcgctcgtcaagaaagcgggcaagtgggtaatggccgcggaactcgtcgagacgagccgt
ttgtacgcgcgctgcattgcgaagatcgagcctgaatggatcgaaaaaatcggcgcgcat
ttgctgaagaaatcgctgtcagaaccgcattgggagaagcgcgcggcgcaggtgtcggcc
ttcgagcgcgcggttttgtacgggctgccgatctataaccggcggcgcgtgagcttcggc
aaacaggaccctgcgcgggcgcgcgagcttttcattcgcggcgcgctcgtcgaaggcgag
ttcgacaccaagctcggatttttcgcgcacaaccgcaagctgcttgccgacatcgagcaa
ctggaacacaagtcgcgccgtcaggatgtgctcgtcgacgacgaactgattttcgcgttc
tacgaccaggcgctgccgaaggggatttacaccggcgcgtcgttcgagcgctggtatcgc
gatgaactgaagaaaagcggtcagcctgaggacaagctgcgcctgctgtatctgtcgcgc
gacgacctgatgcggcatgaagctgcgggtgtgacgaccgatctgttcccgaaacggatg
acgatggcgggcgtcgaaatggcgctcacctatcacttcgagccgggttctccgcgcgac
ggcgtcacgctcgccgtgccgctttatgcgctcaatcaggtcgacgcgcgacgctgcgaa
tggctcgtgcccggcatgctgaaggagaagacgcaactgctgctcaagtcgctgccgcag
aagctgcggcgtcactgcgtgccgctgccggaatatgcggccggtttcgtcgaccggcat
ggggcgccgcgttttggtgctggcgggttgctcgaagcgctgatcgccgatattcgcgag
cagaagcaactcatgctgaaacagtcggacttcaagcttgagacgttgccgccgcatctg
ttcatgaactttaaggtcgtggacgaacacgggcggcaactcgcgatggggcgcaatctg
tcgcagctacgggcggaactgggcggccaggcccagcagcacttccagaagatcgcatcg
agcgcggcgggcgcggcgttggcggacgcggccggctcgcgggcggacggggcagcagtt
gctggagcgccccggacggcgcctgcgtccagcggtccggcacagcgagggaagggcgcg
gctgcgccggtgccgcagacaccgttgcaaggcagcgcgggcggcggcagcactgcgctg
tacgaaaacctcaccacctggaatttcggcaagctgcccgagttgctcgaaatccgtcgc
ggcgggcagacattattcggctacccggctctcgtggatcgcggcacgcattgcgacgtc
gaggtgttcgattcgccggacgaggccgcgcgtattcatcgtgcgggtctgcgtcggcta
ttcgctttgcaactgaaggagccgatcaagtatctggagaaaaatctgccgggcttgcgc
gaaatggcgatgcagttcatgacgcggggtacgcaggaagagttgcgcgatcaactgatc
gacaccgcgctcgatcgcgcctgtctgcaggatccgctgcccgacgacgacgtcagtttc
catacgcgccgcgatgaagggcgtagccggctgacgttgctggcgcaggagattgcgcga
ctggttgggcagattctcggcgaatacgcgtcggtactgaagaagctggcgcaggcgaag
tcgttcacggctgcgcacgccgacatgcagaaccagctcgacgcgctaatcggcaagcga
ttcgtggtggacaccccgtactcgcagctcacgcattttccgcgttatctgaagggtatc
gctttgcggatcgacaaactgaaggctgatcctgcgcgcgacgcacggcagttcgccgaa
ttccagccgctgctgcagaattatcagcgcgcggttgcgcagcgcggtggagtgcccgat
gcacgtctgtccgagttccgctggctgctcgaggagctgcgcgtttcgctgttcgcccag
gagttgcgcacgccgatgcccgtgtcggtcaagcggcttcacaaggtgtgggattcgatg
cagcggtaa
DBGET
integrated database retrieval system
