Paraburkholderia kirstenboschensis: RW095_27565
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Entry
RW095_27565 CDS
T09457
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pkf
Paraburkholderia kirstenboschensis
Pathway
pkf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pkf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RW095_27565 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkf03400
]
RW095_27565 (mfd)
Enzymes [BR:
pkf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RW095_27565 (mfd)
DNA repair and recombination proteins [BR:
pkf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RW095_27565 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WOD19968
LinkDB
All DBs
Position
1:complement(1067728..1071210)
Genome browser
AA seq
1160 aa
AA seq
DB search
MPDIAASSQYSPPVALVKAGQRFAFDGTHGSSDALLIARYHLAYREKVPLLAVVCESAVD
AQRLSQEIGSFAPQARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPA
TTALYRMPPASFLAAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLLD
LYPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDEAARTAFRSR
WRETFEGDPSRASIYKDIGNGVPSAGIEYYLPLFFDDTATLFHYLPEGAQLAFIGDLEAA
IRRFSNDTKQRYNFLSHDRDRPILEPQRLFLSDEDFFILAKPFARLVLPANAGGGWSTPL
PNLAIDRHAEDPVSALRTYLDTTPNRVLFAAESAGRRETLLQLLADNHLKPASSDSFQDW
LTGDAPFSLGVAPLANGFAVPVDGIAIITETELYGPLARRAGRRRQEQASNVDSMVRDLS
ELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYAGDSKLYVPVAQLHVISRYSGA
DPESAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGHAFALEPKDYVKFAE
SFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALL
SPTTLLAEQHMQTFSDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGSVDIVIGTHKLLS
SDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRRQMLEALVPE
ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRSDKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGT
GEVLGDKQSGEIHEIGFQLYTDMLNDAVKALKDGKEPDLTAPLAATTEINLHAPAILPAD
YCGDVQERLSLYKRLANCEHNDAIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGI
SKIDAGEAVIGLQFIPNPPIDAMRIIEMVQKHKHIKLAGQDKLRIETRSPDLAVRVATVK
ETLRALGSPSRGTTAAAAAR
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgccagacatcgccgcatcatcgcagtactccccgcccgtcgcgctcgtcaaagccggc
cagcgttttgccttcgacggcacgcacggctcgtccgacgcgctgctgatcgcccgctac
catctcgcctatcgcgagaaggtgccgctgctcgccgtcgtgtgcgaaagcgccgtggac
gcacagcgcctgtcgcaggaaatcggctctttcgcgccgcaggcgcgcgtgcgcctgttg
cccgactgggaaacgctgccttacgacaccttttcgccgcaccaggatctcgtttccgag
cgcctcgccacgctgcacgatctcggcgaaggccgttgcgacatcctgctcgtgcccgcc
accacggcgttgtaccggatgccgccggcgtcgtttctcgctgcctacacgttttcgttt
tcccagggcgaacgtctcgacgaggcaaagctcaaggcgcagttgacgctggccggctac
gaacacgtgagccaggtggtgcgtccgggcgaatactgcgtgcgcggctcactgctcgac
ctttatccaatgggctcgccgctgccctaccggatcgatctgttcgacgaccaggtagac
tcgatccgcgcgttcgaccccgacacgcagcgcagcctgtatccggtgaaagacgtgcgt
ctcctgcctggccgcgagtttccgttcgacgaagccgcgcgcaccgcttttcgcagccgc
tggcgcgagacgttcgaaggcgatccgagccgcgcgtcgatctataaggacatcggcaac
ggcgtgccgtccgcgggcatcgaatattatttgccgcttttcttcgacgacaccgccacg
ctgttccactatttgccggaaggcgcgcaactcgcgttcatcggcgatctcgaggcggcg
atccggcgcttcagcaacgacacgaagcagcgctacaacttcctgtcgcacgaccgcgac
cgtcccattctggagccgcagcgcctgttcctgtcggacgaagacttcttcatactcgcg
aaaccgttcgcgcggctcgtgctgccggccaacgcaggcggcggctggtccacgccgcta
ccgaatctcgcgatcgaccggcacgcggaagatcccgtatcggcgttgcgcacctatctc
gacaccacgcccaaccgtgtgctgttcgctgccgaatcggcgggacggcgtgaaacgcta
ttgcagctgctcgcggacaaccatctgaagcccgcgtcgagcgacagcttccaggactgg
ctgacgggcgacgcgcctttttcgctgggcgtcgcgccgctcgcgaacggctttgcggtc
cccgtggacggcattgcgatcatcaccgaaaccgagctttatgggccgctcgcgcggcgc
gccggtcgccgccgccaggaacaggctagcaacgtcgattcgatggtgcgggacctgtcg
gagctcaaggtcggcgatccggtcgtgcattcgcagcacggcataggccgctatatgggc
ctcgtcaccatggatctcggcgaaggcgagaccgagtttctgcatctggaatacgcgggc
gacagcaagctctacgtgccggtcgcgcagctgcacgtgatctcgcgctacagcggtgcc
gatcccgaaagcgcgccgttgcattcgctcggctcgggtcaatgggaaaaggccaaacgc
aaggccgcgcagcagattcgcgacaccgccgcggaactgctcaatctctacgcgcgccgc
gccgcgcgttcgggccacgcgttcgcgctcgaaccgaaagactacgtgaagttcgcggag
agcttcggcttcgaggaaacgccggaccaggccgcggcgatcgcagccgtgatcggcgac
atgacgagcggcaagccgatggaccgcctcgtatgcggcgacgtgggcttcggcaagacc
gaagtcgcgctgcgggcggccttcattgctgtcatgggcggcaagcaggtcgcgctactc
tcgcccaccacgctgctcgccgaacagcacatgcagactttctcggaccgcttctccgac
tggcccgtgcgaatcgccgaactgtcgcgcttcaagtcgaccaaggaagtcaacgcggcg
atccagcagatcaacgaaggcagcgtagacattgtgatcggcacgcacaagctgctgtcg
tcggacgtgcagttcaagcggctcggactcgtgatcatcgacgaggaacatcgcttcggt
gtgcggcagaaagaggcgctcaaggcgttgcgcgcggaagtggatgtgctcacgctcacc
gccacgccgatcccgcgtacgctcggcatggcgctcgaaggtctgcgcgacttttctgtt
atcgcgaccgcgccgcaaaagcgtctggcgatcaaaacgttcgtgcgtcgcgaggaagaa
agcgtgattcgcgaagcgatgttgcgcgaactgaagcgcggcggccaggtttacttcttg
cacaacgaagtcgagacgatcgagaatcgccggcaaatgctcgaagcgctcgtgcccgag
gcacgcatcgcggtcgcgcatgggcagatgcacgagcgtgaactcgaacgcgtcatgcgt
gacttcgtcgcccaacgtgcgaacgttttgctgtgcacgacgattatcgaaaccggcatt
gacgtgccgagcgccaacacgatcctgattcatcgctcggacaagttcggcctcgcgcaa
ctgcatcaactgcgcggacgcgtgggacgctcgcatcaccaggcgtatgcgtacctgctc
gtgcacgatccgcaagggttgaccaagcaggcgcaacgccggctcgaagcgatccagcag
atggaagaactcggctcgggcttctatctggccatgcacgatctggagattcgcggcacc
ggcgaagtgctcggcgacaagcagtcgggtgagattcacgagatcggctttcagctttac
accgacatgctcaacgacgcagtgaaggcgctcaaggacggcaaggagcccgacctcacc
gcgccactcgccgccacgaccgagatcaatctgcacgcgccggcgattcttcctgccgac
tattgcggcgacgtgcaggagcgtctgtcgctgtacaagcgccttgcgaattgcgagcac
aacgatgcgatcgacggcattcaggaagaactgatcgatcgcttcggcaagttgccgccg
caagcgcatgcgctcgtggagacgcatcgtctgcggcttgcggcaaagccgttgggtatt
tcgaagatcgacgcgggcgaagcggtgatcggtttgcaattcattcccaatccgcccatc
gacgcgatgcgtatcatcgagatggtgcagaagcacaagcacatcaaactggcgggccag
gacaagctgcgtatcgaaacgcgcagtcccgatcttgcagtgcgggtggcaacggtcaag
gaaacgttgcgggcgttgggctcgccaagccggggcaccacggcggcggccgcggcgcgt
tag
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integrated database retrieval system
