Paraburkholderia kirstenboschensis: RW095_29720
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Entry
RW095_29720 CDS
T09457
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pkf
Paraburkholderia kirstenboschensis
Pathway
pkf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pkf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RW095_29720 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkf03400
]
RW095_29720 (recB)
Enzymes [BR:
pkf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RW095_29720 (recB)
DNA repair and recombination proteins [BR:
pkf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RW095_29720 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
DUF374
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WOD20372
LinkDB
All DBs
Position
1:complement(1583440..1587141)
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AA seq
1233 aa
AA seq
DB search
MSGALHRHALLAEELDVFACSLDGVNQIEASAGTGKTWNICALYVRLLLEKNLNADQILV
VTFTKAATAELHERIRGRLAELHRAIEVDDDGGDPFIRRLFETTLAPERGIDREAALKVV
RRALRTFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDAALRFEMAADFWREQVEP
VAHAHPAFAAWLVAKRAGPASLDEQLARRLKKPLAQLRWGVMDVETSTDPRAGFDTACEL
WHAERDAIMALLEQAQDRLSRTTHKPDHVSAAIAAWTEYFAQGDCHAPPPRAALKLTASA
LKKATKVKFEPPEHAFFEHAEALAAAVVAGEAAQRARWLALMQIWLDYAPAELAARKRTR
RVVSFDDLLSNLYRALAAHPWLADALRARYPAALIDEFQDTDPLQFAIFSRIFAPAGPLF
LVGDPKQAIYSFRAADLHTYLAARASASARYTLAVNQRSTAPIVEACNRVFEANPQAFVL
DGLDYQPVRAGERRRPPLSDPDAGAGDFHVWTLPQGESALTKREAQREASEACAAEIVRL
LRGAREGTVTVGDAPLAPGNIAVLVQTHKQGSLIKRVLAAWGVGSVELAQASVFATLDAE
QIERVLAAVDTPGDLRRLRAALATDWLGLDAAALWRLEQVADAPAVADDPAHAADAMGWV
ERFSRYRTLWHERGFAVMWRTLMRELRVAQRLVAAPDGERRLTNVNHLAELVQARAASQP
GIAPTLRWLAAQRTQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLRE
PPSSGLPDAREYHDASGDAVLHYGCDDEEAERATRHAAREQAAERARLVYVALTRAVYRC
YLVAGTYLSSRSTKESRRSVLNWLVAGGGYDFDGWLADPPDEAALSSRWQALAGAPIALR
ALPKVERRTPLESMQESGADRRARSNRRPLRDQWRMASFSGLIVAGSKAEDAQPPVEEVW
PDHDEIADALVSTPVTVSAPALQAPSVAADDILAFPRGAAAGECLHRMFELADFSDPQSW
PDAIRGALHERPAPVSPELAPRLPAMMRKLLADVVSTELVPGMTLARLDPRRRLNELEFL
FAAPSLDFAALRELLVAHGYPDVALEPGVLRGFVKGFIDMIVEHDGRFWIVDWKSNHLGD
TEQDYAAAPVEAAMASHAYHLQALLYTVALHRYLKTRVRDYSYETHIGGYLYLFVRGVRP
HWRDAGAQAGVHVRRPAFELVALLDAAMIGGAA
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcgcgctgcatcgtcatgcgctcctcgctgaagagctcgatgtatttgcgtgt
tcgctcgacggcgtcaatcagatagaggcgtcggcgggtacgggcaagacctggaacatc
tgcgcgctctacgtgaggttgctgctcgagaaaaatctgaacgctgaccagattctcgtc
gtgacctttacgaaggccgcgaccgccgaattgcacgagcgcattcgcgggcggcttgct
gagttgcaccgcgcgatcgaggtggacgacgacggcggcgatccgttcattcgccgtctc
ttcgaaacgacgctcgcgccggagcgtggcattgaccgcgaagcggcgttgaaggtggtg
cgccgagcgctgcgcacgttcgaccaggcggcgatccacacaatccacgcgttttgccaa
cgggcgttgcaggaagcgccgttcgctgccgcaatgccgttcgcgttcgagatggaagcc
gacgacgccgccttgcgcttcgaaatggctgccgatttctggcgcgagcaggtcgagcct
gtcgcgcatgcgcatccggcgttcgcggcctggctagtggcaaagcgagccggcccggca
tcgctcgacgaacaactcgcgcggcgcctcaaaaagccgttggcgcaactgcgctggggc
gtgatggacgtcgagacgagcaccgatccgcgagctggtttcgacactgcatgcgaactg
tggcatgcggagcgcgatgcgatcatggcgcttctcgaacaggcgcaagaccgtttgagc
agaaccacgcacaaaccggatcatgtgagcgccgcgattgccgcatggaccgagtacttc
gcgcagggcgattgccatgcgccgccgccgcgggccgcgctcaaattgacggcttccgcg
ttgaagaaggccaccaaggtcaagttcgaaccgccggagcatgcgttcttcgagcatgca
gaagcgctggcggcagctgttgttgcgggcgaagcggcgcaacgcgcgcgctggcttgcg
ttgatgcagatctggctcgactatgcgcccgccgaactggcggcgcgcaagcgcacgcgc
cgcgtcgtttcgttcgacgatctgctgtccaatctctaccgcgcgctcgcagcgcacccg
tggctcgcggatgcgttgcgagcacgttatccggccgcgttgatcgacgaattccaggac
accgacccgctgcagtttgcaatcttcagccgtatttttgcgccggcgggcccgctcttt
ctggtcggcgatccgaagcaggccatctacagttttcgcgcggcggatctgcatacctat
ctggcggcgcgcgcgtcggcttcggcacgctacacgcttgccgtcaaccagcgctcgacg
gcgccgatcgtcgaagcttgcaatcgggtcttcgaggcaaacccacaggcgttcgtgctc
gacgggctcgactatcagccggtgcgagccggcgagcggcgcaggccgccattgtcggac
ccggacgcgggagcgggcgacttccacgtctggaccttgcctcaaggtgagagcgcattg
accaaacgcgaggcccagcgcgaagcgagtgaagcgtgcgcggccgagatcgtgcggctc
ttgcgcggcgcgcgcgagggcaccgtcacggtcggcgacgcgccgctcgcgcccggcaac
attgcagtgctcgtgcagacgcacaagcagggcagtctcatcaaacgtgtgctggcggct
tggggcgtcggcagtgtggagctcgcgcaggcctcggtgtttgcaacgctcgacgcggag
cagatcgaacgcgtccttgcagccgtcgacacacccggcgacctgcgccgtttgcgcgcc
gcgctcgcgaccgactggctcggtctcgacgccgcggcgctgtggcgtctcgaacaggtt
gccgacgcacccgctgtcgccgacgatcccgcgcacgcggcggacgcaatgggctgggtc
gagcgtttttcgcgctaccgcacgctctggcatgagcgcggctttgccgtcatgtggcgc
acgctgatgcgcgaactgcgggtcgcgcaacggctcgtcgccgcgccggacggcgagcgg
cgtcttaccaacgtcaatcaccttgccgaactcgtgcaggcgcgcgcggcttcacagccc
ggcattgcgccgacgttgcgctggctcgccgcgcagcgcacccagggcggcggcgaggag
gcgcaactgcggctcgagtcggaccgcaatctcgtgcagatcgttaccgtgcacaagtcc
aagggactggaatacgcagtcgtgttctgtccgtttctgaacgacggcggcttgcgtgag
ccgccgtcgtcgggcttgcccgacgcccgcgagtatcacgatgccagcggcgacgcggtg
ctgcactacggttgcgacgacgaggaggccgaacgtgcgacccgtcacgcagcgcgcgag
caggcggccgaacgggcgcggctcgtgtacgttgcgctgacacgcgcggtgtaccgctgt
tatctggtcgcgggcacgtacctgtcgtcgcgctccacgaaagagtcgcgacgcagtgtg
ttgaactggctggtggccggcggtggctatgacttcgacggctggctcgccgatccgccc
gacgaggccgcgttgtcctcgcgctggcaagcactggcgggtgcgccgatcgcattgcgg
gcactgccgaaggtcgagcgccgcacgccgctcgaaagcatgcaggaaagcggcgctgac
aggcgcgcgcgcagcaatcgccggcccttgcgcgatcagtggcgcatggcgagctttagc
ggtctgatcgtcgcgggcagcaaggccgaagacgcgcagccgccagtggaagaagtgtgg
cccgatcacgatgaaatcgccgatgcgctcgtctcgacgccggtcacagtgtccgcgccg
gcgctacaggcgccgtccgttgccgccgacgacattctcgcgtttccgcgcggagcagcg
gccggcgagtgtctgcatcgcatgttcgaacttgcggattttagcgatccgcaaagctgg
ccggatgcgatccgcggagcgttgcacgagcgtcccgcgccagtgtcgcccgagcttgct
ccgcgtttgccggcgatgatgcgcaaacttctcgcagacgtcgtcagcaccgaactcgtg
cccggcatgacgctggcgcgtctcgatccgcggcggcgtctgaacgaactcgaattcctg
ttcgcggctccgtcgctcgatttcgccgcgctgcgcgagttgctggtcgcgcatggctat
ccggacgtcgcgctcgagccgggtgtgctgcgaggtttcgtgaaggggttcatcgacatg
atcgtcgagcacgacgggcggttctggatcgtcgactggaagtccaaccatctgggcgat
accgagcaggattacgcggccgcgccggtcgaagcggcgatggcgagccatgcgtatcat
ctgcaagcgctgctttatacagttgcgctgcatcgttacctgaagactcgcgtgcgcgat
tattcgtacgagacgcatatcggcggctatctgtatctgttcgtgcgcggcgttcgtccg
cattggcgcgacgccggggcccaagccggtgtgcacgtgaggcggcccgcgttcgaactc
gttgcgctgctcgacgcggcgatgatcggaggtgcagcatga
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