Paraburkholderia kirstenboschensis: RW095_32210
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Entry
RW095_32210 CDS
T09457
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pkf
Paraburkholderia kirstenboschensis
Pathway
pkf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RW095_32210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkf03019
]
RW095_32210
Enzymes [BR:
pkf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RW095_32210
Messenger RNA biogenesis [BR:
pkf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RW095_32210
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Sacchrp_dh_NADP
HI1480
P-loop_SecA
CMS1
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
WOD17471
LinkDB
All DBs
Position
1:2138673..2140202
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AA seq
509 aa
AA seq
DB search
MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLNSMPPHASASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ
IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP
PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH
LIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQV
LVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAISLVCVDELQLLK
DIEKLIKRPVPQEVIAGFEPDPTAKPEPILRRGQGGGGGGRSPRQGQGAPKGGNGGAAKP
AQRSGQRPPNGQQQPKPQAAKPAGNGGQPRRDGQRQDDRPRAIAHEGSAAQHAPRKPQSG
NPGALLGGAKSRNDSPRGGNPARSGQRGR
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctcggcttgtccgaacccctggtccgcgctgtacacgaactcggc
tacaccactccgacccccatccagacgcaagcgatccccgctgtgctgaacggcggcgat
ctgctggccggcgcgcaaaccggcaccggcaagacggccggcttcacgctgccgatcctg
cagcgtctcaattccatgcccccgcacgcctccgcgtcgggcaagcgcgcggtccgcgcg
ctgattctcacgcctacgcgtgaactcgccgcgcaggtcgaagaaagcgtgcgcgcctac
ggcaagtatctgaagctgaaatcgacggtcatgtttggcggcgtcggcatcaatccgcag
atcggcgcgctcaggagcggcgtggacatcgtcgtcgcaacgcctggccgattgctcgac
catatgcagcagaagaccatcgacctgtcgcatctcgagattctcgtgctcgacgaagcg
gaccggatgctcgacatgggcttcattcacgacatcaagcgcgtgctggccaagctgccg
ccgaagcgtcagaacctgctcttctcggcaactttctccgacgagatcaaaacactcgcc
gacaatctgctcgactcgccggcgctgatcgaagtcgcgcgccgcaatacgacggcggaa
acggttgcgcaaaaaattcacccggtggatcgcgacaagaagcgcgagttgctaacgcat
ctgatcaagcagcacaactggtttcaggtgctggtgttcacgcgcaccaagcacggcgcc
aatcgcctcgccgaacagctgaccaaagacggcatcagcgctctggcgattcacggcaac
aagagccagtcggctcgtacgcgtgcgctcgccgagttcaaggatggcacgctgcaggtg
ctggtcgccacggacatcgccgcgcgcggcatcgacatcgatcagttgccgcacgtcgtc
aatttcgatctgcctaacgtgccggaagactacgtgcaccggatcggccgcaccggtcgc
gcgggtgcgacgggcgaggcaatttcactggtgtgcgtcgacgaactgcaactgctgaag
gacattgagaagctgatcaagcgtccggtgccgcaggaagtgatcgccggttttgaaccg
gacccgaccgcgaagccggaaccgattttgcgccgcggccagggcggtggcggcggcggt
cgttcgccgcgtcaaggtcaaggggcaccgaagggtggcaacggcggcgcggcaaaaccg
gcgcaacgctcggggcaacgtccgccgaacggccagcagcagccgaagccgcaagccgcg
aagccggccggcaacggcggacagccgcgccgcgacggtcagcgtcaggacgaccgcccg
cgcgctattgctcatgaaggtagcgccgcacagcacgcgccgcgcaaaccgcagagtggc
aatccgggtgcattgctcggcggcgcaaaatcacgcaacgactcgccgcgcgggggcaat
ccggcgcgcagcggtcagcgtggccgttga
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