Paraburkholderia kirstenboschensis: RW095_32710
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Entry
RW095_32710 CDS
T09457
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pkf
Paraburkholderia kirstenboschensis
Brite
KEGG Orthology (KO) [BR:
pkf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pkf03016
]
RW095_32710
Enzymes [BR:
pkf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RW095_32710
Transfer RNA biogenesis [BR:
pkf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RW095_32710
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
MetJ
Usp
Motif
Other DBs
NCBI-ProteinID:
WOD17565
LinkDB
All DBs
Position
1:complement(2252587..2254725)
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AA seq
712 aa
AA seq
DB search
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPGAAELMQQADAV
AQEIDLDFLWECAPDDEFPFATLGAEYFGERFGPVERAALVLRMHGAPVYFRRKGRGMYQ
RAPQEQLKMALAGLERKRQQALVQQGYEEELKAGRLPEAFTGKTALALLTKPDKNTIEYK
ALEAAAAARGISQARLMLECGAIPSARALHEARFLSEFFPHGTGFPPVTPGSVPEDLPEA
NVQAFSIDDITTTEIDDAFSVEYLADGRVRIGVHIAAPALGIQRGDEVDAIARTRLSTVY
MPGDKITMLPDSVVDAFTLAEGGLRPALSLYVIVNRETQEIVASETRAERVFVKNNLRHN
TLDELVTEEALAAGTGDYPHKEDIAVLWPFAQALFEKRQAARAGYGLRREVQRNTDFNFY
VEGEHITITPRRRGSPLDTIVAELAILANSSWGAFLHDHGVPGIYRTQRAFGAPTGPKRT
RMQTNAAPHEGLGVTQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLF
AVVQGFDDTYSAYADHQRRMEYFWCLRWLKQENRKQVVASVVKGDLVRLEEIPLLLHVPG
LGVHARGTRLQMEVMSIDELTVEASVRLLHVLDAPTVTSGAEADEADEADEAEEGEEEIV
EASDESAESEAEAQAEADVDGAAGGATSTDSADNDNGASDAAAEQRITEPGR
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttttcttcgaggaatcgggcagtttcaaggcaggcagcgtgctgtcgcgccag
ggcgatgcgtttcaggtcgagttgccgggcggccggcgcgcgaaggtgcgcgcgaaggac
gtgctgatcgaattcgaaaagccgggcgcggccgaactgatgcagcaggccgacgccgtt
gcgcaggagatcgacctggacttcctgtgggaatgcgcgcccgacgacgagtttccgttc
gccaccctcggcgcggaatatttcggcgagcgcttcggcccggtcgagcgcgcggcgctg
gtgctgcgcatgcatggtgcgccggtgtatttccgccgtaagggccgcggcatgtatcaa
cgcgcgccgcaggagcagctgaaaatggcgctcgcgggcctggagcgcaagcgtcagcag
gcgctcgtgcagcaaggctacgaagaggaactgaaggccggccgcttgcctgaagcgttc
accggcaagacggcactcgcgctgctcaccaagcccgacaagaacacgatcgaatacaag
gcgctcgaagccgccgcggctgcgcgaggcatttcgcaagcgcgtctcatgctcgaatgc
ggcgccattccgtcggcgcgcgctttgcacgaggccaggttcctctcggaatttttcccg
cacggcaccggctttccgcctgtcacgcccggcagcgtgcccgaggatctgcccgaagcc
aacgtgcaagcgttctccatcgacgacattacgaccactgagatcgacgacgcgttttcc
gtcgaatatcttgcggacggccgcgtgcggatcggcgtgcacatcgcggcgccggcgctc
ggcattcaacgtggcgacgaggttgacgccatcgcgcgcacgcgtttgtcgaccgtctac
atgccgggcgacaagatcacgatgctgcccgatagcgtcgtcgacgcgttcacgctcgcc
gaaggcggcttgcgtccggcgctttcactgtatgtgatcgtcaatcgagagacgcaggag
atcgtcgcgagcgaaacgcgcgcggagcgcgtgttcgtgaagaacaatctgcggcacaac
acactcgacgaactggtcaccgaagaggcgctcgccgcggggacgggcgactatccgcac
aaggaagatatcgccgttttgtggccgttcgcgcaggcgctgttcgaaaagcgtcaggct
gcgcgcgcgggttacggtctgcgccgcgaggtgcaacgcaataccgacttcaacttttac
gtcgagggcgagcacatcacgatcacgccgcgccggcgcggttcgcctctcgacacgatc
gtcgccgaactggcgatcctggccaattcgtcatggggcgcgtttctgcacgaccacggc
gtgccgggcatctatcgcacgcagcgggcgttcggcgcacccaccggcccgaagcgcacg
cgcatgcagacgaacgccgcgccgcacgaagggctcggtgtcacgcaatatgcgtggagc
acatcgccgctgcgccgttacgtcgacctggtgaatcagtggcagttgctggcctgcgta
cagcacggcgtgacagcgaaactggccgccccgttcaagcctaaagatgccgatctattc
gccgtcgtgcaaggtttcgacgacacgtacagcgcgtacgccgatcatcagcgtcgcatg
gaatatttctggtgtctgcgctggctgaagcaggagaaccgcaagcaggtggtggcgtcc
gtcgtgaagggcgatctcgtgcggctggaagagattccgttgttgctgcacgtgccgggg
ctcggcgtgcatgcgcgcggcacgcgtcttcagatggaggtgatgtcgatcgacgaactg
accgtcgaggcgtccgtgcgtcttctgcatgtgctcgacgcgccgaccgtcacgagcggc
gccgaagctgacgaggccgatgaggcagacgaagcggaagagggcgaagaggaaatcgtc
gaagcgtccgatgaaagcgccgaaagcgaagccgaggcgcaagcggaagccgatgtcgac
ggcgcggcaggcggcgcaacctcgacggacagcgcggataacgacaatggcgcaagcgat
gccgccgctgagcagcgcatcacggaaccggggcgatga
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