Paraburkholderia kirstenboschensis: RW095_40305
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Entry
RW095_40305 CDS
T09457
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pkf
Paraburkholderia kirstenboschensis
Pathway
pkf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RW095_40305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkf03019
]
RW095_40305
Enzymes [BR:
pkf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RW095_40305
Messenger RNA biogenesis [BR:
pkf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RW095_40305
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Fe-ADH
RPC3_helical
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WOD18926
LinkDB
All DBs
Position
1:3932552..3934012
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AA seq
486 aa
AA seq
DB search
MSDTAVTPSTATFDQFGLAPDILKAVKESGYTTPTPIQEQAIPVVLAGRDVMGAAQTGTG
KTASFSLPIIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAV
VFGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLSQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVA
EGDKTGAVVQLIRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
CSPNERKQLADIEKLIKRPLEVLRLTVDAPVRHHHEERAPRRERSEGRDERGGRRRAGAP
SGSFDRPHHHRAQPVDDFFLKPYEPSPASVRKGEEAEAAGSAPQKSSSKQPLAALLGGFG
MPRKSS
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacagccgtcacccccagcactgcgacctttgatcaattcggtctcgcaccc
gacatcctgaaagcggtcaaggaatcgggctacaccacgcccacgccgattcaggagcag
gcgattcctgtcgtgctggcaggccgcgacgtcatgggcgccgcgcaaaccggcaccggc
aagaccgcaagcttctcgttgccgatcatccagcgcctgttgccgcaggccagcacgagc
gcttcgcccgcccgccatccggtgcgcgcgctgattctcacgccgacccgcgagctggcc
gatcaggtcgccgctaacgttcagtcgtatgccaagcacacggcgctgcgcagcgcggtg
gtattcggcggcgtggacatgaacccgcagtccgagcagttgcgccgcggcgtcgaaatt
ctgatcgccacgccgggccgcctgctcgatcacgttcaacagaaaaccgccaacctgagc
caggtgcaaatcctcgtgctcgacgaagcggaccggatgctcgacatgggcttcctgccg
gacttgcagcgcattctgaatttgctgccgaaagagcgtcagacgctgttgttttcggcc
acgttctcgggcgaaatcaagaagctggctgccacgtacctgcgcaatccgcagactatc
gaagtggcgcgcagcaactcgaccgcgaccaacgtcacgcagatcgtctatgaagtggct
gagggcgacaagaccggcgcggtggttcagctgatccgcgagcgtggcctgaaacaggta
atcgtgttctgcaacagcaagatcggcgcgagccgtctcgcgcgcagtctggaacgtgac
ggcgtggtggcgacggcgattcacggcgatcgctcgcaaaacgagcggatgcaggcgctc
gatgcgttcaagcgaggcgagatcgaggcgctggttgccaccgacgtcgcagcccgcggt
ctggatatcgccgaactgccggcggtgatcaacttcgatttgccgttcaacgcggaagac
tatgtgcaccgcatcggccgcacgggccgcgcgggtgcttccggcgacgctttgtcgctg
tgcagcccgaacgagcgcaagcaactcgccgatatcgagaagctgatcaagcgtccgctg
gaagttctgcgtctgaccgtggatgcacccgtgcgccatcatcacgaagaacgcgcaccg
cggcgtgagcgcagcgagggccgtgacgagcggggcggtcgccgccgcgcgggcgcgccg
tcgggttcgttcgaccggccgcatcatcatcgcgcgcagcctgtggacgacttcttcctg
aagccttatgagccttcgcctgcttcggttcgcaagggcgaagaggccgaggctgccggg
tcagcgccgcagaagtcgtcttcgaagcagccgcttgccgcgttgctaggcggctttggc
atgccgcgcaagtcgtcgtga
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