Paraburkholderia kirstenboschensis: RW095_40320
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Entry
RW095_40320 CDS
T09457
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pkf
Paraburkholderia kirstenboschensis
Pathway
pkf03030
DNA replication
pkf03430
Mismatch repair
pkf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pkf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RW095_40320 (dnaE)
03430 Mismatch repair
RW095_40320 (dnaE)
03440 Homologous recombination
RW095_40320 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pkf03032
]
RW095_40320 (dnaE)
03400 DNA repair and recombination proteins [BR:
pkf03400
]
RW095_40320 (dnaE)
Enzymes [BR:
pkf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RW095_40320 (dnaE)
DNA replication proteins [BR:
pkf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RW095_40320 (dnaE)
DNA repair and recombination proteins [BR:
pkf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RW095_40320 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
WOD18929
UniProt:
A0ABZ0EQP0
LinkDB
All DBs
Position
1:3936268..3939858
Genome browser
AA seq
1196 aa
AA seq
DB search
MSPMSDPRFVHLRVHSEFSIADGIVRLDDVVKAAAQDGQGALALTDLGNAFGLVRFYKEA
RGKGVKPIAGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEVE
AGWLESGLGEGLLALSGAQQGDVGLALAAGNQEAAKRNALHWAKVFPGGFYIELQRCGQP
GGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQKRFTP
EQYFRTQDEMATLFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVHL
SKEGLEKRLEQLFPDEAERAAQRDTYYQRLEFECGTIIKMGFPGYFLIVADFINWAKNNG
VPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI
QYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIAD
AMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGD
ESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSLGQVPLDDPA
SFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHG
REVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMAQ
HRELFRQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEF
MAANMSLAMDDTDKVKILFEDCLANKMTVLPPDINLSAYRFEPVAEADGKRSRTIRYGLG
AIKGSGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTVEALIRAGAFDTLHQNRAQ
LIASVSLAMEAAEQASANALQAGLFDMGDAPSQGHELVDEPEWPEKKKLQEEKAALGFYL
SGHLFDAYKNEVRRFVRQKIGELKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQC
EVTVFNETFEANKQLFKEDELLVVQGQARNDAFTGGIRFTVETVMDLGRARCRYAEAVKV
QMNGNADALALRRVLEAHSAGKDEPQAVPAPAASSRGGNGGGRNGGGGFGGGYGGDNGRQ
RQPVQIPNGLAVQVVYRSENAEGEMRLGDAWRVKPTDELLADLRGQFAGSAIEIVY
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgtcagatccccgcttcgttcatctccgcgtccactccgaattctcgatt
gccgacggcatcgtgcgtcttgacgacgtcgtcaaggcggctgcccaagacggtcagggt
gcgctcgccctcaccgatctcggcaacgcgttcggcctcgtccgtttctataaggaagcg
cgcggcaaaggggtcaaacccattgccggctgcgacgtgtggatcaccaatccggacgac
cgcgacaagccttcgcgcctgctgttgctggtgaaagaccggcgcggctacctgaacctg
tgcgagttgctgagcaaggcttccctcacgaaccagtatcgcggtcgtgcggaagtcgag
gcgggctggctcgaatccggcttgggcgagggcttgctcgcattgtcgggggcacagcag
ggcgacgtcggactcgcgcttgccgcaggcaatcaggaagcggcaaagcgcaacgcactg
cattgggcaaaggtctttccgggcggcttctatatcgagttgcagcgttgcggtcagccg
ggcggcgagcagtatgtccagcaggcggtcgcgctcgcggcttcgttgaaactgccggtg
gtcgccacgcaccccatgcagttcatgacgcccgacgactttaccgcgcacgaagcgcgc
gtgtgtatttcggaaggcgacattctcgccaatccgcgccgtcagaagcgcttcacgccc
gagcagtatttccgcacgcaagatgaaatggccacgctcttcgcggacattccgtcggcg
cttgccaatacggtcgaaatcgccaagcgctgcaatctcacgctcgaactgggcaagccg
aagctcccgctctttccgacgcccgacggcatgtcgctcgacgactacctcgtgcatctg
tcgaaagaagggctggaaaagcgtctcgaacagttgttcccggatgaagcggagcgcgcc
gcgcagcgcgacacgtattaccagcggctcgaattcgagtgcggcacgatcatcaagatg
ggctttccgggctacttcctgatcgtcgcggacttcatcaactgggcgaagaacaatggc
gtgcccgtcggccccggccgcggctcgggcgcgggctcgctcgtcgcctatgcgctcggc
gtgaccgacctggatccgctgcgctacaacctgctgttcgagcgtttcctgaacccggaa
cgcgtgtcgatgcccgacttcgacatcgacttctgccagcacggccgcgaccgcgtgatc
cagtacgtgaaggagaaatacggcgcagacgccgtgtcgcagatcgcgacgttcggcacg
atggccgcgaaggcggcggtgcgcgacatcggccgcgtgctcgatctcggctacatgttc
acagacggcatcgcaaagctgattccgttcaagccgggcaagcacgtcacgattgccgac
gcgatgaaggaagagccgctcctgcaggagcgcttcgacaacgaagacgaagtgcatcag
ctgctcgaactcgcgcaacgcgtggaaggcctcacgcgtaacgtcggcatgcacgcgggc
ggcgtgctgatcgcgcccggcaagctgaccgatttctgcccgctctacacgcagggcgac
gaaagcggcgtcgtgagccagtacgacaaggacgacgtcgaagctgtcggcctcgtgaag
ttcgactttctgggtctcaccacgctgaccatcctggattgggccgagcgttatatccgc
cgtctcgatccgtcgaaaaaagactggtcgctcgggcaagtgccgctcgacgatccggcg
tcgttctcgatcctgaagaaagcgaatacggtcgccgtgttccagctggaaagccgcggc
atgcagggcatgctgaaagacgcgcagcccgaccgcttcgaggacatcatcgcgctcgtc
gcgttgtaccgtccgggcccgatggacctgatcccgagcttctgcgcgcgtaagcatggc
cgcgaagtggtcgagtatcccgacccgcgcgtcgaacctgttctgaaagagacctacggc
atcatggtctaccaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctc
ggcggcgccgacttgctgcgtcgcgcgatgggtaagaagaaggccgaggaaatggcccag
catcgcgagctgttccgccagggcgccgcgaagaacgggctgaccggtgagaaggccgac
gaaatcttcgacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggct
gcgtatgcgctcctcgcgtattacaccgcgtggctgaaggcgcaccacccggcggaattc
atggcggcgaatatgtcgctcgccatggacgacacggacaaggtcaagatcctgttcgaa
gactgtctcgccaacaagatgaccgtgctgccgccggacatcaatctgtcggcgtatcgt
ttcgagccggtcgcggaggcagacggcaagcgctccaggaccatccgctacggcctcggc
gcgatcaagggcagcggccagaatgcgatcgaagaaatcctgcgcgcgcgcgaagacggt
ccgtttatcgacatcttcgatttctgcaaccggatcgaccgtcgcgtcgtcaatcgccgc
acggtcgaagcgctgattcgtgcgggcgcgttcgacaccttgcatcagaatcgcgcgcaa
ctcatcgcgtcagtttcgcttgccatggaagcggccgagcaggcgagcgcgaatgcgctg
caagccggcctcttcgatatgggcgacgcgccgtcgcaaggccacgaactggtcgacgaa
ccggagtggcccgaaaagaaaaagttgcaggaagagaaggctgcgctcggcttctacctg
tcgggccatctgttcgacgcgtacaagaacgaagtgcgccgcttcgtgcgccagaagatc
ggcgagctgaaagaagggcgcgacaagctcgtcgccggcatcatcgcgtcgctgcgcacg
cagatgacccagcgcggcaagatgttgatcgcgcttctcgacgacggcaccggtcaatgc
gaagtgacggtcttcaacgagacgttcgaagcgaacaagcaactgttcaaggaagacgag
ttgctcgtcgtgcagggccaggcgcgcaacgacgcgttcacgggcggcatccgcttcacg
gtggaaacggtaatggatctgggccgcgcgcgttgccgctatgccgaggccgtgaaagtg
cagatgaacggcaacgcggacgcgttggcgttgcggcgtgttctcgaggcgcatagcgcg
ggtaaagacgagccgcaggcagtgccggcgccggcggcttcatcgcggggcggcaatggc
ggtgggcgaaacgggggcggcggatttggtggcggctacggcggcgacaatgggcggcag
cgtcagcccgtgcagatcccgaacgggctcgccgttcaggtggtgtaccgcagcgagaat
gcagagggcgaaatgcgtctgggcgacgcctggcgcgtgaagccgaccgacgaactgctc
gcagacctgcgcggccagtttgccggcagcgcgatcgagattgtctattga
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integrated database retrieval system
