Stutzerimonas kunmingensis: LW136_06480
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Entry
LW136_06480 CDS
T08242
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pkg
Stutzerimonas kunmingensis
Brite
KEGG Orthology (KO) [BR:
pkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkg03019
]
LW136_06480 (hrpA)
Enzymes [BR:
pkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LW136_06480 (hrpA)
Messenger RNA biogenesis [BR:
pkg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LW136_06480 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
AAA_25
T2SSE
NACHT
ABC_tran
DUF1409
Motif
Other DBs
NCBI-ProteinID:
UIP34078
LinkDB
All DBs
Position
1401367..1405455
Genome browser
AA seq
1362 aa
AA seq
DB search
MTDATPAIDTLLKNLDQALFADRHRLRRQLHELRKQPDEAKLAQWLERFQASAAKVEARR
QSVPRIRYDDSLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGLI
GHTQPRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDSSLIKLMTDGILLAETQHD
RFLERYDTIIVDEAHERSLNIDFLLGFLKTLLPRRPDLKVIITSATIDLQRFSEHFDGAP
IVEVSGRTYPVETWYRPLAAEIDEDGNRVEDDLTVDQGILAALDEIAAHEQSVGKRPGDV
LVFLPGEREIRDAAEVLRKANLKFTEVLPLYARLTPAEQQKIFQPRPGRKIVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIESPDGKAISDGFNLLQELS
AVNRENQLTPLGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASALSVQDVRERPADRQ
QAADQAHAQWKDPDSDFAALINIWRGFEEKRQELGSNPLRTWCRKNFLNYLRLREWRDAH
RQLTLIARELKLGAPAENRGQDRSHKGGDTRGSGLDREKNTAERAPEHAGAPAPTTDTKV
NVILRQQAEASEAAQKAKSYAAVHKAILAGLLSQIGNKTEEGDFLGARQRRFWVHPSSVI
GRKKPNWLMAAELVETTKLFARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYE
QVTLYGMIVVGRRPVHYGPIDPPAARELFIREGLVRGEMHSRARALSANRELLERLDELE
AKARRRDILADEETLFDYYAARLPADIYQTASFENWYKRESAKDPQLLIMREEDVLAREA
SEVTAAQYPDYLRIGELQLPLEYHFEPNHPRDGVTLRVPAPLLPQLRSERLDWLVPGLLE
TKAVALVRNLPKALRKNFVPVPDFVGAALAKITFGEGALPEALGRELLRMTGARVSDDAW
AEAAAGLESHLKMNIEVVDARGKFLGEGRDLAELTARFAEASQAALAPQQQKAEQKPVEA
KGFAQVAEKAQAKMAGLSMTVYPALVEEAGVVKEGRFPTQAEAEWQHRRALQRLLLQQLA
EPAKYLRNKLPGLTELGLLYRDMGKVDALVEDILLASLDSCILDGEAQLPRDGAALASLA
ERKRGDWTAHAERLARLTLEILKHWHGLQKRFKGKIDLAQAVALNDIKAQLGNLVYPGFV
RETPAEWLKEYPRYLKAIEQRFEKIGAQLQRDRVWSGELAGYWEQYQTRLKKHLQEGKRD
AELALYRWMLEEYRVSLWAQQLGTRMAVSDKRLNKQWSQVEP
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcaacgcccgctatcgataccctgctgaagaatctcgaccaggccctgttc
gctgatcgccaccgcctgcgccggcagctgcacgagctgagaaagcagccggacgaggcc
aaactggcccagtggctggagcgttttcaggcatccgccgccaaggtcgaggcgcgcagg
cagagcgtgccgcgcattcgctacgacgatagcctgccaatcgccgccaagcgcgacgag
atcaaggccgcgctggaaaagcatcaggtgctggtaattgccggtgagaccggctccggc
aagaccacccagctaccgaagatctgcctggagatcggccgtggcgtgcacgggctgatc
ggccatactcagccgcgccggcttgcggcacgcagcgtcgccactcgcgtggccgaggaa
atcggcacgccactgggtgagctggtgggttatcaggtgcgtttcgaggatcagagcaag
gacagctcgctgatcaagctgatgaccgatggcatcctgctggccgagacgcagcacgac
cgcttcctcgagcgttacgacaccatcatcgtcgacgaggcccacgagcgttcgctgaac
atcgacttcctgctcggttttctcaagaccctgctgccgcggcggccggatctgaaggtc
atcatcacttcggcgaccatcgacctgcagcgcttttcggagcatttcgacggtgcgccc
atcgtcgaggtctccgggcgtacctacccggtggagacctggtatcggccactggcggcc
gagatcgacgaggacggcaaccgggtggaggacgacctgaccgtcgaccagggcatcctc
gccgcgctggacgagatcgccgcccacgagcagagcgtcggcaagcgccccggcgatgtg
ctggtgttcctgcccggtgaacgcgagattcgcgacgcggccgaggtgctgcgcaaggcc
aatctgaagttcaccgaggtgctgccgctgtacgcgcggctgacgccggccgagcagcag
aagatcttccagccgcgaccggggcgcaagatcgtgctggccaccaacgtcgccgagacc
tcgctgaccgtgcccggtatccgctacgtgatcgattccggtaccgcgcgcatcagccgc
tacagctaccgcgccaaggttcagcggctgccgatcgaggcggtgtcccaggccagcgcc
aaccagcgcaaggggcgctgcgggcgggtcgagccgggtatctgcattcggctttacagc
gaggaagacttcctcggccggccggaattcaccgatccggagatcctgcgcaccaacctc
gccgcggtgatcctgcagatgctgcatctgcgcctgggcgacattcaggatttccccttt
atcgagtcgccggatggcaaggccatcagcgacggcttcaacctgttgcaggagctctcg
gcggtcaatcgcgagaaccagctgaccccgctgggccgccagctggcgcgcctgccgatc
gacccgcgactgggtcgcatgcttctcgaagccgcacagcagggcagcctggccgaggtg
cttattgtcgccagcgcactctcggtgcaggacgtgcgcgaacgtccggccgaccgccag
caggccgccgatcaggcccatgcgcagtggaaggaccccgactcggacttcgccgcgctg
atcaatatctggcgcggttttgaggaaaagcgccaggagctgggctccaacccactacgc
acctggtgccggaagaacttcctcaactatctgcgtctgcgtgaatggcgcgacgcgcat
cgccagctgacgcttattgcccgtgaactcaagcttggcgctcccgcggagaatcgcggt
caagaccgctcccacaagggcggcgatacccgtgggagtggtctcgaccgcgaaaagaac
actgcggagcgagcaccggaacacgccggcgctcccgcaccgaccaccgacaccaaggtc
aacgtcatcctacgccagcaggccgaagccagcgaggcggcgcagaaggccaagagctac
gcggccgtacacaaggcgatcctcgccggcctgctcagccagatcggcaacaagaccgag
gagggcgacttcctcggcgcgcgccagcggcgcttctgggtgcatccctccagcgtgatc
gggcgcaagaagcccaactggctgatggccgccgagctggtggaaaccaccaagctgttc
gcgcgcatggtcgccaagatcgagcccgactggatcgagccactggccggccacctgatc
aagaagaaccacttcgagccgcactgggagaagaagcgcggacaggtggtggcctacgaa
caggtaacgctctacggcatgatcgtcgttggccgtcggcccgtgcattacggccccatc
gatccgcccgctgcccgcgagctgttcatccgcgaagggctggtacgcggcgagatgcac
agccgtgcgcgagcgctcagcgccaatcgcgagctgctcgagcgcctcgacgagctggaa
gccaaggcacgccgccgcgacatcctcgccgatgaggaaaccctgttcgactactacgct
gcgcggctgccggcggacatctaccagaccgccagtttcgagaactggtacaagcgcgaa
agcgcgaaagacccgcagctgctgatcatgcgcgaggaagacgtgctcgcccgcgaggcc
agcgaagtcaccgctgcgcagtacccggattacctgcgcatcggcgagctgcagttgccg
ctggaataccatttcgagcccaaccacccgcgcgatggcgtgaccttgcgcgtgccggcg
ccgctgttgccgcaattgcgcagcgagcggctcgactggctggtaccggggctgctggaa
acgaaggcggtggcgctggtgcgcaacctgcccaaggcactgcgcaagaacttcgtgccg
gtgccggatttcgtcggcgccgcgctggccaagatcaccttcggtgaaggcgcgctgccg
gaggcgctgggccgtgaactgctgcgcatgactggtgcacgcgtatcggacgacgcctgg
gccgaggcggcagccggtctggaaagccatctgaagatgaacatcgaggtggtcgacgcc
cgcggcaagttcctcggtgaggggcgtgatctggctgagctcaccgcgcgcttcgccgag
gccagccaggccgccctggcgccgcagcagcagaaggccgaacagaagccggtcgaagcc
aagggttttgcccaggtcgcagaaaaggcccaggcgaagatggccgggctgtcgatgacc
gtctacccggcgctggtggaagaggcaggggtggtcaaggaaggccgtttcccgacccag
gccgaggccgagtggcaacatcgtcgcgcgctgcagcgcctgttgttgcagcagctggcg
gagccggccaagtacctgcgcaacaagctgccggggctcaccgaactgggcctgctctac
cgtgacatgggcaaggtcgatgcgttggtcgaggacatcctgctggccagcctcgacagc
tgcatcctcgacggcgaagcccagctaccgcgtgacggcgccgcactggcgtccctggcc
gagcgcaagcgcggcgactggaccgcgcatgccgaacgcctggcgcgcctgacgctggaa
atactcaagcactggcacggcctgcagaagcgcttcaagggcaagatcgacctggcccag
gcggtggcgctcaacgacatcaaggcgcagctgggcaacctggtctatccgggctttgtt
cgcgaaacgcctgccgagtggctgaaggagtacccgcgctacctcaaggccatcgagcaa
cgcttcgagaagatcggtgcgcagctgcagcgtgatcgcgtctggtccggcgaactggcc
ggctactgggagcagtaccagacacgcctgaagaagcacttgcaggaaggcaagcgcgat
gccgagctggcactgtatcgctggatgctcgaggaatatcgcgtctcgctctgggcacag
cagcttggcaccaggatggcggtttcggacaagcgcctgaacaagcagtggagccaggtc
gagccctga
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