Stutzerimonas kunmingensis: LW136_14165
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Entry
LW136_14165 CDS
T08242
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pkg
Stutzerimonas kunmingensis
Pathway
pkg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LW136_14165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkg03019
]
LW136_14165
03009 Ribosome biogenesis [BR:
pkg03009
]
LW136_14165
Enzymes [BR:
pkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LW136_14165
Messenger RNA biogenesis [BR:
pkg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LW136_14165
Ribosome biogenesis [BR:
pkg03009
]
Prokaryotic type
rRNA helicases
LW136_14165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
UIP31293
LinkDB
All DBs
Position
complement(3024229..3025899)
Genome browser
AA seq
556 aa
AA seq
DB search
MTQEIGGFAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAF
ALPILSKIDPARKEVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGPQLK
AIRQGAQVIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPES
RQTVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLL
EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTNQKVAEARLPNAQQVLDARIKKLTNSLAPLVADAEATHGELLDKLVADIGCSPRAL
AAALLRKATNGQALTLAEVEREQPLVPTSSPRERTERSDRPERSGDRERRAPVPLAEGRA
RCRTPLGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDRLLGKLKD
TRVGGKQLKLRRYRED
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggctttgccgcactcggtattcactccgctgttcttgctgcc
atcagcgcagtcggctacgaagaaccatcccctattcaatctcaggcgatcccggtgatc
cttggcggtcacgacatgatcggccaggcgcagaccggtaccggcaagaccgcggccttt
gcgctgccgatcctgtccaagatcgatcccgctcgtaaggaagtgcaggcactgatcctc
gcgccgactcgcgaactggccctgcaggtcgccactgcattcgaaacctattccaagcag
atgcctggcctgaccgtcgtcgcggtctacggtggcgccccgatgggcccgcagctcaag
gccatccgccaaggcgcgcaggtcatcgtcgccacgccgggtcgtctggtcgatcacctg
agccgcaacagcgggctgctgtcgaccattcgcttcctggtcctcgacgaagcggacgag
atgctcaagctgggcttcatggacgacctcgaagtgatcttcgaagcgatgccagagagc
cgtcagactgttctgttctccgctacgctgccgcactccattcgcgcgattgccgaaaag
cacctgcgtgagccgcagcacatcaagatcgctgccaagacccagaccgtcgctcgtatc
gagcaggcacacctgatggtccatgccgatcagaagatccaggctgtgctgcgcctgctg
gaagtcgaggatttcgacgccctgattgccttcgtgcgcaccaagcaagccacgctggat
ctcgccgccgcgctggaagccaagggctacaaggctgccgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgttatcgaatcgctcaaggatggccgtctggacatcgtcgtc
gctaccgacgtggccgcccgcggtctcgatgtggcgcgcatcacccacgtattcaacgtg
gacatgccctacgatccggaatcctacgtacaccgcatcggccgtaccggccgtgccggt
cgcgaaggccgcgcgctgctgctggttaccccgcgtgagcgtcgcatgctgcaggttatc
gagcgcgtgaccaaccagaaggtcgctgaagcccgtctgccgaatgcgcagcaggtgctg
gacgcgcgcatcaagaaactcactaacagcctcgcgccgctggttgccgatgccgaagct
acccatggcgagttgctcgacaagctggtcgccgacattggttgcagcccacgtgctctg
gccgctgcgctgttgcgcaaggccaccaatggtcaggctctgaccctggccgaggtggaa
agagagcagccgctggttccgaccagcagcccgcgtgagcgcaccgagcgttcggatcgt
cctgagcgtagtggtgatcgcgagcgtcgcgctccggtcccgctggccgaaggtcgcgcc
cgctgccgtacgccgcttggagcgcgtgacggcatcgctgcccgcaacctgctcggcgcc
atcctcaacgaaggcggcctggctcgcgaagccattggtcgcatccaggtgcgcgacagc
ttcagcctggtcgagctgccggaagacggccttgaccgcctgctcggcaaactcaaggac
acccgcgtcggcggcaagcagctcaagctgcgtcgctatcgcgaggattga
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