Stutzerimonas kunmingensis: LW136_14780
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Entry
LW136_14780 CDS
T08242
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pkg
Stutzerimonas kunmingensis
Pathway
pkg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LW136_14780 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkg03019
]
LW136_14780 (rne)
03009 Ribosome biogenesis [BR:
pkg03009
]
LW136_14780 (rne)
Enzymes [BR:
pkg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LW136_14780 (rne)
Messenger RNA biogenesis [BR:
pkg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LW136_14780 (rne)
Ribosome biogenesis [BR:
pkg03009
]
Prokaryotic type
rRNA processing factors
LW136_14780 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
UIP31407
LinkDB
All DBs
Position
3136134..3139268
Genome browser
AA seq
1044 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFSKSPEGRVNIKDVLREGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLDIPADMGLIVRTAGLGRSSEELQC
DLDYLLQLWTAVKDASQDRPASFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALS
FIQQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKM
REALEADRARIQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHF
EVQRLRDDSPEIMAGQASYEMSPTEAEEAQPVSSTRTLVRQEAAVKTAPQRTAPAAAAAA
PAETPVAAPVQEPSLFKGLIKSLVGLFAGETKEPQATAEVEKKPASPRPQRNDERRSGRQ
QNRRRDSRGGRDEERKPREERQPREERQAREERQPREERQPRPPREERKPREQAEVAESQ
PRRERAPREDRKPREERKRELRAPIDEAPIAVAAEEEQPERQPRAPREERKPRAERQAPV
AADELLQQTEDANEAEDAQDSNEGSEGNDGDRPRRRSRGQRRRSNRRERQRDANGNEIDE
VDESNAPVKTEEIAVAATAAALAANTADTEAAPQAKLADDAVIQTSTDGVATIVEHAPSV
ESTDEQRTVAEQSIAIEAADETSTHAAEVAPSEAPQVVQANDTPQPAPEPVVEKVEVAPT
LAPVLTPSGRAPNDPREVRRRQREAERLAKEAAEADAKAAAEQPLASPEIVASEPVVEAQ
VEQVAEPVPADAQPEQFAEPVTTLHEQPLAEADEPAEQAQVSTAEVDEQKPEAPTTEEVV
QPSPQESEQAAEGDQPDNREKPQG
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcaactcagcccgaagagttgcgtgtcgcactggtcgac
ggccaacgtctgttcgatctggacatcgaatcaggtgcccgcgagcagaagaaagccaac
atctacaagggcaagatcactcgcgtcgagcccagtctcgaagctgctttcgtcgacttc
ggcgccgagcgccatggcttcctccccctcaaggaaatttctcgcgaatacttcagcaag
tcgcctgaaggccgcgtgaacatcaaggacgtcctgcgcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagagcgcggcaacaaaggcgctgcactgaccaccttcatcagtctg
gccggccgttatctggtcctgatgccgaacaatccgcgtgctggtggcatttcgcgccgc
atcgaaggtgaagaacgcaatgaattgcgtgaagccctgaacggtctcgatatccccgct
gacatgggtctgatcgtccgcacggcaggcctgggccgctccagcgaagagctgcagtgc
gacctcgactatctgttgcagctctggaccgcagtcaaggatgcgtcccaggatcgcccc
gcgtcatttctgatctatcaggaatccaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagtgtcgaagcacaggacgaggcattgagc
ttcatccagcaggtgatgccgcagtacgccagcaagatcaagctgtacgaagattccgta
ccgctgttcaaccgcttccagatcgaaagccagatcgagacggccttccagcgtgaagta
aaactgccttccggcggctccatcgtcatcgatccgaccgaagcactggtatccatcgac
atcaactcggctcgcgccaccaagggtggcgacatcgaagaaaccgccctgcagaccaac
ctggaggcggccgaggaaatcgcccgccaactgcgtttgcgcgacatcggcggactaatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgcagtcgaggagaagatg
cgcgaagcactggaagccgaccgtgcacgtatccaggtcggccgtatctcgcgcttcggt
ttgctggaaatgtcccgccagcgtctgcgcccctctctgggcgagaccagcggcatcgtc
tgcccacgctgcaacggccaaggcatcattcgtgacgtcgaatcgctgtcgctggcgatt
ctgcgcctgatcgaagaagaagccctcaaggaccgcaccgccgaggttcgcgcccgcgtg
ccgttccaggtagcagcattcctgctcaacgagaaacgcaacgcgatcaccaagatcgag
ctgcgcacccgtgcgcgcatcttcatcctgccggacgatcacctggaaacgccgcacttc
gaagttcagcgactgcgtgacgacagcccagaaatcatggcaggccaagccagctacgaa
atgagcccgaccgaggccgaagaagctcagccggtcagctccacacgcaccctggttcgt
caggaagcggcggtcaagaccgcaccgcagcgcaccgcaccggcggcagccgccgcagcg
ccagccgaaacacccgttgccgcgccggtgcaggaaccaagtctgttcaagggcctgatc
aaatccctggtcggactgttcgcaggcgagacgaaagaaccgcaggccacagccgaagtc
gagaagaagcccgcctcgccgcgcccgcagcgcaatgacgagcgccgcagcggacgccag
cagaaccgtcgccgcgattcgcgcggtggccgtgatgaggagcgcaagccgcgcgaagaa
cgccagccccgtgaggagcgccaagctcgcgaggagcgtcagccccgcgaagagcgccag
ccgcgcccaccacgcgaggaacgcaaaccccgtgaacaggccgaagttgccgaaagccag
ccgcgccgcgagcgagccccacgcgaggaccgcaagccccgcgaggagcgtaagcgcgaa
ctgcgagcaccaatcgacgaagctccgatcgctgtagcagcagaagaagagcagcccgag
cggcaaccacgcgccccgcgcgaagagcgcaagccgcgcgccgaacggcaagccccggta
gccgccgatgagctgctgcagcaaaccgaggatgcgaacgaagccgaggacgcccaagac
tccaacgagggcagcgaaggcaacgacggcgaccgcccacgccgccgctcccgcggccag
cgtcgtcgcagcaatcgccgtgagcgtcagcgtgacgccaacggtaacgaaatcgacgag
gtcgacgagagcaacgccccggtgaaaaccgaggaaatcgccgtcgcagcaacagccgcc
gccctggccgcgaacaccgccgacaccgaagcggctccacaggccaagctcgctgatgac
gccgtgattcaaaccagcaccgatggtgtagcgacgattgtcgagcatgcgccaagcgtg
gaaagtacggacgagcagcgcactgtggccgagcagtcgatagctatcgaagctgcagac
gagacatcgacacacgctgccgaagttgcgccgagcgaagcaccacaggtcgtccaagcc
aacgacaccccacagcctgccccggagccggtggtcgagaaagtcgaagtcgcaccgacc
ctggcgccagtgctgacgcctagcggacgcgcgcctaatgatccgcgcgaggtccgtcgc
cgtcagcgtgaagccgagcgtctggccaaggaagcggcagaagccgacgccaaggccgca
gcggagcaacctctggccagcccggagatcgtcgccagcgagccagtcgtcgaagcgcaa
gttgaacaagttgcggaaccggtgcctgccgacgcccagcctgagcagttcgccgagcca
gtcaccaccctccacgagcagccgctcgccgaggctgacgagcccgccgaacaagcacag
gtgtcgaccgctgaagtagacgagcagaagccagaagcaccgacaactgaggaagtggtt
cagccatcaccccaggagtcggaacaagctgcagaaggtgaccagccagataaccgtgag
aagccgcaaggctaa
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