Stutzerimonas kunmingensis: LW136_15040
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Entry
LW136_15040 CDS
T08242
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pkg
Stutzerimonas kunmingensis
Pathway
pkg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LW136_15040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkg03400
]
LW136_15040 (mfd)
Enzymes [BR:
pkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LW136_15040 (mfd)
DNA repair and recombination proteins [BR:
pkg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LW136_15040 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UIP31454
LinkDB
All DBs
Position
3191748..3195194
Genome browser
AA seq
1148 aa
AA seq
DB search
MSVLRLPPLPAASGKQHWGNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAF
FAPQLAVLHFPDWETLPYDIFSPHQDIVSQRIAALYQLPELSHGVLVVPITTALHRLAPK
RFLLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPY
RIDLFDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFR
RCPIYQDLSTGITPAGIEYYLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQFWSDVRN
RYEERRVDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVEPGIGRERFTAQALPEL
AIEAKASEPLGKLRRFLDEYAGRVLFTAESAGRREVLLELLARLKLRPQEVEGWEEFLAS
QERLAITIAPLDEGLQLDDVALVAESPLFGQRVMQRRRREKSRDGGENVIKNLTELREGS
PVVHIDHGVGRYQGLVTLEIEGQAQEFLLLQYAEDAKLYVPVASLHLIARYTGSDDALAP
LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFPFEE
TPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPTTLL
AQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDDVKFS
NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPPA
RRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARVAIG
HGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGE
GQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLAALIPEDYLPDVH
ARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKIDAG
PQGGRIEFSADTSVDPMVLIKLIQSQPNRYKFEGATLFKFQVPMERPEERFNTLEALLER
LAPNEQGS
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtcttgcgccttccccctctgcctgccgccagcggcaagcaacattggggcaat
cttccaggagctgcgctaagcctggcgattgccgaagcagccagcaacgccaaacgcttc
acgctcctgctcactgccgacagccaaagcgccgagcgcctgcaggaagaactcgccttc
ttcgcgccacagctggcggtattgcattttcctgactgggaaacgctgccctacgacatc
ttctcgccgcaccaggacatcgtctcccagcgcattgccgccctctaccagctaccggag
ctgagccacggcgtgctggtagtgcctatcaccaccgccctacacaggctggcgccaaag
cgcttcctgctgggttcgagcctggtgctggacgtcgggcagaagctggatgtggagcag
atgcgcctgcgcctggaagcagccggctatcgctgcgtggataccgtgtacgagcacggc
gagttcgccgtgcgcggcgcgttgatcgacctgttccccatgggcagccccctgccctac
cgcatcgacctgttcgatgacgagatagagacgctgcgcaccttcgatccggagaaccag
cgctcgatcgacaaggtcgagtcgatccgcctgttgccagcacgcgagttccccctgaag
aaggaggcagtcaccggcttccgcgcgcgttttcgcgagcgtttcgacgtcgacttccgc
cgctgcccgatctaccaggatctctccaccggtatcaccccggcgggcatcgagtactac
ctgccgctgttctatgaagaaaccgcgacgttgttcgattacctgcccgaagacagccag
gtgttctccctgcccggcatcgagcaggccgccgagcagttctggagcgacgttcgcaat
cgctacgaagaacgccgcgtcgaccccgagcgaccgctgctgccgccggccgaactgttc
atgccggtggaagactgcttcgctcggctcaagctctggccgcgtgtggtcgccagccaa
caggatgtcgagcctggcatcggccgcgaacgcttcaccgcgcaggccctgccggaactg
gcaatcgaggccaaggcgagcgaaccgctgggcaagctgcgacgcttcctcgacgaatat
gccgggcgtgtgctgtttactgccgaatcagccggccgccgcgaagtattgctggagctg
ctcgcccgtctgaagctgcgcccgcaagaagtcgaaggctgggaggaattcctcgccagc
caggagcgtctggcgatcaccatcgccccgctcgacgaaggcctgcaactggacgacgtc
gcactggtcgcggaaagcccgctgttcggtcagcgcgtcatgcagcgccggcgacgcgag
aagagccgcgacggcggcgagaacgtcatcaagaacctcacagagctgcgcgaaggctcg
ccggtggtgcacatcgatcacggtgtcggtcgctaccagggcctggtcactctggagatc
gaaggccaggcgcaggaattcctgctgctgcagtacgccgaggacgccaagctctacgta
ccggtcgccagcctgcacctgatcgcccgctatacaggcagcgacgacgcgctcgcgcca
ctgcaccggctcggctcggagacctggcagaaagccaagcgtaaggcggccgagcaggtc
cgcgatgtcgcggccgagctgctggatatttacgcccgccgcgccgcacgcgagggttat
gccttcaaggacccgcaggtcgactacgaaacgttcgccgcaggctttccgttcgaagaa
acgcccgatcagcaggccgccatcgacgcggtacgcgaggacctgctgtcggccaagccg
atggatcgactggtctgtggtgacgtcggctttggcaagaccgaggtggccatgcgcgcc
gccttcatcgccgtccatggcggccggcaggttggcgtactggtgccgaccaccctgctc
gctcagcagcactacaacagcttccgcgaccgcttcgccgactggccggtgcgggtcgag
gtgatgagccgcttcaagtccgccaaggaagtgcagaacgctatcgccgagcttgccgag
ggcaagattgacattctcatcggcacccacaagctgctgcaggatgacgtcaagttcagc
aacctgggcctggtcatcatcgatgaggagcaccgcttcggcgtacgccagaaggaacag
ctcaaggcgctgcgcagcgaggtggacattctcacgctgaccgccacgccgattccacgc
acgctgaacatgtccatcgccggcatgcgcgacctgtcgatcatcgccacgccgccggcg
cgccggctgtcggttcgcaccttcgtcatggaacagcagaacaccgtgatcaaggaggcg
ctgctgcgcgagctgttgcgcggcggccaggtctattacctgcacaacgatgtgaagacc
atcgagaaatgcgccgccgacctgcaggcactggtgccggaggcacgcgtcgcgatcggc
cacgggcaaatgcgcgagcgtgaccttgaacaggtcatgagcgacttctaccacaagagg
ttcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtgcccagcgccaac
accatcatcatcgaacgcgccgacaagttcggcctggcgcagctgcaccagctgcgtggc
cgggtaggccgcagccatcaccaggcctatgcctatctgctgaccccgacccgcaaggca
atgaccgatgacgcgcagaagcgcctggaggccatcgccaatgcccaggacctcggtgca
ggctttgtcctcgccacccacgacctggaaatccgcggcgccggcgagctgctcggcgag
ggccagagcgggcagatccaggcggttggcttcaccctttatatggaaatgctcgagcgc
gcggtcaaggcgatccgcaagggcgagcagccgaatctggagcagccgctcggcggcggg
ccggaaatcaacctgcgcctggcagccctgatcccggaagactacctgccggatgtgcat
gcccgcctgatcctctacaagcgcattgccaatgcggccgacgaagacgggctgaaagaa
ctgcaggtggagatgatcgaccgcttcggcctgctaccggaaccgacgaagaacctggtg
cgcctgacactgctcaagctgcaggcggaaaagctcggcattaccaagatcgacgcaggc
ccgcagggtgggcgcatcgagttctcggccgacacctcggtcgacccgatggtgctgatc
aagctgatccagagccagccgaatcgctacaagttcgaaggcgccacgctgttcaaattc
caggtgccgatggaacgcccggaggaacgcttcaatacgctggaagcgctgctcgagcgg
ctggcgcccaatgagcaaggatcgtag
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