Stutzerimonas kunmingensis: LW136_16410
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Entry
LW136_16410 CDS
T08242
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pkg
Stutzerimonas kunmingensis
Pathway
pkg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LW136_16410 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkg03019
]
LW136_16410 (rhlB)
Enzymes [BR:
pkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LW136_16410 (rhlB)
Messenger RNA biogenesis [BR:
pkg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LW136_16410 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
UIP31702
LinkDB
All DBs
Position
3461074..3462501
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AA seq
475 aa
AA seq
DB search
MLKALKKIFGKAPDVRASAADDVLAADHEGQHSAPQQATTPDSQPKSQTAERAAEKPRRQ
RSSKPPKPAAPAWKLEDFEVEAAEGKTRFHDFKLAPELMHAIHDLGFPYCTPIQAQVLGY
TLAGRDAIGRAQTGTGKTAAFLISTITQLLDTPPPRDRYMGEPRALIIAPTRELVVQIAN
DALDLTKYTNLNVMSFVGGMDFDKQLKLLESKFCDILVATPGRLLDFNQRGEVHLDMVEV
MVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAQQWTTNPAVVEI
EPENVASDTVEQHVFAVAGSDKYKLLYNLITQNDWTRVMVFANRKDEVRRIEERLTRDGI
SAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYV
HRIGRTGRAGTSGTSISFAGEDDSFALPPIEALIGRKIQCEMPPAELLAPVPHSR
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcactcaagaaaatctttggcaaggcaccggatgtacgggccagcgcagcc
gatgacgtgctcgccgccgaccacgagggccaacacagcgcccctcagcaagcaacgacg
cctgattctcaacccaagtcgcagaccgctgagcgcgccgccgaaaagccgcgccgtcaa
cgcagcagcaagccgccaaaacccgccgctccggcgtggaagctggaggacttcgaggtc
gaagcggccgaaggcaagacccgcttccacgacttcaagctcgcacccgagctgatgcac
gcaattcatgacctgggttttccgtactgcacgccgatccaggcccaggtgctcggctat
accctcgccggcagagacgccattggccgcgcccagaccggcaccggcaagacggctgcg
tttctcatctccaccatcacacagctgctcgacactccaccgccgcgggaccgctatatg
ggcgaaccgcgcgcactgatcatcgcgccgacccgtgaactcgtggtgcagatcgccaat
gacgcgctggacctgaccaaatacaccaacctgaacgtgatgagcttcgtcggcggcatg
gacttcgacaagcagctcaagctgctggaatcgaaattctgcgacatcctggttgccaca
cccgggcgcctgctggatttcaaccagcgcggcgaggtgcatctggacatggtcgaggtg
atggtgctggatgaagccgatcgcatgctcgacatgggcttcattccgcaggtccgccag
atcatccggcagacgccgcccaagagcgaacgccagaccctgctgttctcagccacgttc
accgatgacgtgatgaacctggcgcagcagtggacgaccaaccccgccgtggtcgagatc
gagccggaaaacgtcgccagcgacaccgtcgagcaacacgtattcgccgtggctggcagc
gacaagtacaagctgctgtacaacctgatcacccagaatgactggacgcgggtgatggtc
ttcgccaaccgcaaggatgaagtgcggcgcatcgaggaacgcctgacccgggacggcatc
agcgccgcgcagatgtccggcgacgtgccgcagcacaagcgcatccgcacgctggaaggt
ttccgcgagggcaagattcgggtactggtggcgaccgatgtcgccggtcgaggcatccat
gtcgacggcatcagccacgtgatcaactttacgctgccggaagatccggatgactacgtg
caccgcatcggccgcaccggccgtgccggcaccagcggcacgtcgatcagcttcgccggc
gaggacgactccttcgccctgccgccgatcgaagcgctgattggccgcaagattcagtgc
gaaatgccgccggcggaactgctcgccccggtccctcattcgcgctga
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