Stutzerimonas kunmingensis: LW136_16480
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Entry
LW136_16480 CDS
T08242
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pkg
Stutzerimonas kunmingensis
Pathway
pkg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LW136_16480 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkg03400
]
LW136_16480 (sbcB)
Enzymes [BR:
pkg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LW136_16480 (sbcB)
DNA repair and recombination proteins [BR:
pkg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LW136_16480 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LW136_16480 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LW136_16480 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UIP31715
LinkDB
All DBs
Position
complement(3473945..3475381)
Genome browser
AA seq
478 aa
AA seq
DB search
MNSSIFWYDFETTGISPSRDRPLQVAGIRTNEALEEVGEPLNIYCRPSDDILPHPAACLV
TGITPATLEQKGLCEAEFIHRLHQQLSLPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAR
EWQGGNSRWDLIDLVRTAYALRPEGLVWPEEEGRVTLKLERLSVANGLEHLNAHDALSDV
RATIALARLVRDRQPRLYDYLYNLRRKQAVLEQIRLLEPMVHVSGRFSAARHFLSVVLPL
GWHPRNRNALIVCDLQAGPEPLLQETAETLRQRLYTRRDQLADGELPVPLKLVHVNKCPV
VAPLKVLRTQDIQRLGLDMPVCHERAAMLREQRQIWSTKLEDIYREDRFAGTDDPEQQLY
DGFLGDRDRRLCDQVRSLSPAELAKQPFRFDDARLDELLFRYRARNFPEALSVDEQAQWR
QFCQQRLSDGACGAPNTLVQFESDIEQFMIGATPAQRQLLQQWREYGQGLRERYRLSN
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
gtgaattcaagcatcttctggtacgacttcgaaaccacaggaatctcgcccagccgcgac
cgtccgttgcaggtggcgggtatccgcaccaacgaggcgctcgaggaagtcggcgagccg
ctgaacatctattgccgtccctccgacgacatccttccgcatccggcggcctgcctggtc
actgggatcacccccgcgaccctcgaacagaagggcttgtgcgaggccgaattcattcat
cgtctgcatcaacagctgtcgttgcctggcacctgcggcgccggttacaacagcctgcgg
ttcgacgacgaggtgacgcgctacagcctgtaccgcaacttctacgatccctatgcccgt
gaatggcagggcggcaacagccgctgggatctgatcgatctggtacgcacggcttatgct
ctgcgcccggaaggcctggtctggcctgaagaggaggggcgggtaacgctcaagctcgaa
cgactgagtgtggccaacgggctggaacatctgaacgcgcacgatgcgctatccgatgtg
cgcgcgaccatcgccctggccagactcgttcgtgatcggcagccgcggctgtacgactat
ctctacaacctgcgccgcaagcaggcggtgcttgagcagatccggttgctggaacccatg
gtgcacgtgtccggccgcttctccgctgcacggcattttctctcggtggtcctgccgctg
ggctggcacccgcgcaatcgcaatgcgctgatcgtctgcgatctgcaggccggaccggag
ccgctcttgcaggaaacggctgaaacgctgcgtcagcgcctgtatacccgacgtgaccag
ctcgccgatggcgagttgccggtgcccttgaagctggtgcacgtcaacaagtgtcccgtg
gtggcgccgctcaaggttttgcgcacgcaagacatccagcgccttggtctggatatgccg
gtttgccatgagcgtgcagcgatgcttcgagagcagcggcagatctggagcaccaagctc
gaagacatctatcgcgaagaccgcttcgctggcactgatgatccggagcagcagctgtat
gacggttttctcggggaccgcgaccggcggctgtgcgaccaggtccgtagcctgtcacct
gcggagctggcgaaacagccattccgattcgatgatgcgcgcctcgacgagctgttgttt
cgttaccgcgcgcgtaactttcctgaagcgttatccgtcgacgagcaagcgcaatggcgt
cagttctgccaacagcggctgagtgatggggcatgtggcgcgcccaacaccctcgtgcag
ttcgagtcggatatcgagcaattcatgatcggcgccacgccggcacaacggcaactgttg
cagcaatggcgcgagtacggtcaggggttgcgtgagcgttaccgcttgagcaattaa
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