Stutzerimonas kunmingensis: LW136_19170
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Entry
LW136_19170 CDS
T08242
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pkg
Stutzerimonas kunmingensis
Pathway
pkg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pkg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LW136_19170 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkg03021
]
LW136_19170 (rpoD)
Transcription machinery [BR:
pkg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LW136_19170 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
CRR41_C
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
UIP32216
LinkDB
All DBs
Position
4016895..4018748
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AA seq
617 aa
AA seq
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MSGKAQQQSRLKELIQRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEV
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAHFPGTVDSILADYERVTTEGGRLSDILSGYIDPDDDGAAGPQE
VEPETPQTTAKPTADDKDDEEEDDSDSEEEEGDGGPDPEVARMRFGAVAEQLEKAKKALK
KHGRASQQAVEELEALAILFMPIKLVPKQYDALVERVRNALSQIRAQERAIMQLCVRDAR
MPRADFLRQFPNNETNLDWAEQLASGKGKYAEAIGNRKEDIVRCQQKLIELEQECDLVIA
DIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSAMQSPIDVAT
VESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPTRSEHLRSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtcccgcctcaaagagttgatccagcgtggccgtgag
cagggttacctgacttacgcagaggtcaacgaccacctaccggaggatatttccgatccg
gaacaggtggaagacatcattcgcatgatcaatgacatgggtatcaatgtattcgaggtt
gccccggatgccgatgccctgttgctggccgaagccgataccgatgaagccgctgccgaa
gaggccgccgccgcactcgctgcggtcgagaccgacatcggtcgaaccaccgatcccgtt
cgcatgtacatgcgtgaaatgggcacggtcgaactgctgacccgcgaaggcgagatcgaa
atcgccaaacgcatcgaggaaggcattcgcgaagtgatgagcgccatcgctcacttcccc
ggcaccgtcgacagcattctcgccgactatgagcgagtgacgaccgaaggtggccgcctg
tccgacatcctcagcggttacatcgaccctgacgacgacggcgctgctggtcctcaggag
gtcgagccggaaactccgcagaccaccgcgaagccgacggccgacgacaaggatgatgag
gaagaggacgactccgacagcgaagaggaagaaggcgatggcggccccgaccccgaggtc
gcgcgtatgcgtttcggcgcagtcgccgagcagctggagaaagccaagaaggcgctgaag
aagcacggccgcgccagccagcaggccgtcgaggagctcgaagcactcgccatcctgttc
atgccgatcaagctcgtacccaagcagtacgacgcactggtcgagcgcgttcgcaacgcc
ctgagccagatccgcgcccaggaacgcgccatcatgcagctgtgcgtgcgtgacgcccgc
atgccgcgcgccgacttcctgcgtcagttcccgaacaacgagaccaatctcgactgggcc
gagcaactggcttccggcaaaggcaagtacgccgaagccatcggcaaccgcaaggaagac
atcgttcgctgccagcagaagctgatcgagctggaacaggaatgcgacttggtcatcgct
gacatcaaggacatcaaccgtcgcatgtccatcggcgaggccaaagcccgccgtgcgaag
aaagagatggttgaagccaacctgcgcctggttatctcgatcgcgaagaagtacaccaac
cgcggcctgcagttcctcgatctgatccaggaaggcaacatcggcctgatgaaggcggtg
gacaagttcgaataccgccgcggctacaagttctctacctacgccacctggtggattcgc
caggcgatcactcgttccattgccgaccaggcgcggaccatccgtatcccggtgcacatg
atcgagacgataaacaagctcaaccgcatctcccgtcagatgctgcaggaaatgggtcgc
gaacccacacctgaagagctgggcgaacgcatggaaatgcccgaggacaagatccgcaag
gtactgaagatcgccaaagagccgatctccatggaaacgccaatcggtgacgacgaagac
tcgcacctgggtgacttcatcgaagactcggccatgcagtcgccaattgacgtagccact
gtggaaagcctcaaggaagccactcgcgaagtgctctccggcctcaccgcacgtgaagcc
aaggtactgcgcatgcgcttcggcatcgacatgaacaccgaccacaccctcgaggaagtc
ggcaagcagttcgatgtcacccgcgagcgaatccgtcagatcgaagccaaggcgctgcgc
aagctgcgccacccgacgagaagcgagcacctgcgctccttcctcgacgagtaa
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