Ectopseudomonas khazarica: JLK41_02020
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Entry
JLK41_02020 CDS
T07269
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pkh
Ectopseudomonas khazarica
Pathway
pkh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JLK41_02020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkh03019
]
JLK41_02020
Enzymes [BR:
pkh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JLK41_02020
Messenger RNA biogenesis [BR:
pkh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JLK41_02020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QTS86965
LinkDB
All DBs
Position
complement(428278..430176)
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AA seq
632 aa
AA seq
DB search
MSFASLGLSEALVRAIESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPIL
ERLFPAGHPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGLN
PQVQALAKGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAQRQNLLFSATFSKDITNLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKANKV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIPDGDLMGFDASTVEAERPEAREPRQPRNAGQKKQKAESGAKPKGEHQN
GGRKDKGKDGGKDQKAKPQGQKRRRGQRDDTGQGQPAAAIPALPPDRDPEEFLDDDIDNF
GNRVDYVSPVQNKQQGRGRRSSGTPGNGGTQQGQGQRQSNKGPRNNNGAGAGNGANKNRR
QGNGQGGQGQGRNGANRGRGRAAHDGRVTSLDRDELPRAEAAVRSPRDKQPVIVHKSSRL
DRFPTAEQLDELSNSNRPRGEKPALLTRNRDE
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctctagtccgtgcgatcgaatccgccggc
tatacccagcccactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgat
ctgatggtggcggcccagacgggcacgggcaagactgcaggtttcgccctgccgattctc
gaacgcctgttcccggccggccatccagaccgcgaacagcgccatggcccgaagcaaccg
cgcgtgctggtgctgacgcccacccgcgagctggctgcccaggtgcatgacagcttcaag
atctacgcccgcgacctgaagttcgtcagcgcctgcatcttcggtggcgtcggcctgaac
ccgcaggtccaggcactggccaagggcgtcgacgtactcgtcgcctgccccggccgcctg
ctcgacctcgccggccagggcagcgtggacctttcccacgtggaaattctggtactggac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtcaagaaggtgctcgcgcgc
ctgccggcgcagcgccagaacctgctgttctcggcgaccttctccaaggacatcaccaat
ctcgccggcaagctgctgcacaatcccgagcgcatcgaggtcacgccgccgaacaccacc
gtcgagcgcatcgagcagcgtgtgttccgcctggccgccagtcacaagcgcgcactgctt
gcgcacctgatcactcagggtgcctgggaacaggtactggtgttcacccgtaccaagcac
ggcgccaatcgcctggccgagtacctcgacaagcatggcctgccggctgccgcgatccac
ggcaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggcgaacaaggta
cgcatactggtcgccaccgatatcgccgcccgcggcctggacatcgaccaactgccgcac
gtggtcaacttcgagctgcccaacgtcgaggaggactacgttcaccgcatcggccgcacc
ggccgtgccggacgtagcggcgaggccatctcgctggtcgccccggacgaggagaagctg
ctcaagagcatcgagcgcatgaccaagcagaagatccccgatggcgatctgatgggcttc
gatgccagcaccgtggaggccgagcgccccgaagcgcgcgaaccacgccagccgcgcaac
gccggccagaagaagcagaaggccgagtccggcgccaaacccaagggcgagcaccagaac
ggcggccgcaaggacaagggcaaggacggcggcaaggatcagaaggccaagccgcagggg
cagaagcgccgccgcggacaacgcgatgacacgggccagggccagcctgcagcggcgatt
cccgccctgccgccagatcgtgatccggaagagttcctcgacgacgatatcgacaacttc
ggcaaccgcgtcgactacgtcagcccggtccagaacaagcaacaggggcgtggccgtcgt
tcgagcggcacccccggcaacggcggtacccagcagggtcaaggccagcgccagagcaac
aagggcccgcgcaacaacaatggcgccggcgccggcaatggcgccaacaagaaccgtcgc
cagggcaatggccagggcggccagggccaggggcgcaacggtgccaaccgtggccgtggc
cgcgctgcccatgacggccgcgtcacctcgctcgaccgcgacgagctgccgcgtgccgag
gctgccgtgcgcagcccgcgtgacaagcagccggtcatcgtgcacaagagctcgcgcctg
gaccgtttccccacggccgagcaactcgatgagctgagcaacagcaaccgccctcgcggc
gagaagccggcactgctgacgcgcaaccgcgacgagtga
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