Ectopseudomonas khazarica: JLK41_06230
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Entry
JLK41_06230 CDS
T07269
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pkh
Ectopseudomonas khazarica
Brite
KEGG Orthology (KO) [BR:
pkh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pkh03016
]
JLK41_06230
Enzymes [BR:
pkh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JLK41_06230
Transfer RNA biogenesis [BR:
pkh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JLK41_06230
Prokaryotic type
tRNA splicing ligases
JLK41_06230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QTS87756
LinkDB
All DBs
Position
complement(1355755..1356981)
Genome browser
AA seq
408 aa
AA seq
DB search
MQTKTYNLLEVANGKPIKLWTQGVPVEEDAKQQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTTLMAHDLPDNLAGLRAAIEKAVPHGRTSGRG
ARDKGAWENVPELTDHAWSALSERFKLITDKHPKLEKTNNRKHLGTLGTGNHFIEVCLDE
ANRVWFMLHSGSRGVGNAIGNLFIELAQADMRQHIANLPHRDLAYFEEGSQHFNDYVEAV
GWAQDFAKQNRALMMHAVIAAARGVISKPFDVALEAVNCHHNYVQKERHFGEEVLVTRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRTMSRTKAKKLFTVDDQIKA
TAHVECRKDADVIDEIPMAYKDIDQVMDAQRELVEVMHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccaagacttacaacctgctggaagtggccaacggcaagccgatcaagctgtgg
acgcaaggcgtcccggtcgaggaggacgccaagcagcagttgatgaatacggcgaagatg
ccgttcatcttcaagcacctggcggtgatgccggatgtgcacctgggtaagggctcgacc
atcggcagcgtgatccccacggtcggcgcgatcatcccggcggccgttggtgtggatatc
ggttgcggcatgatcgccgcgcgcaccacgctgatggcccacgacctgccggataacctg
gccggcctgcgcgccgccatcgagaaggccgtgccgcacggccgtacttccgggcgcggc
gcccgcgataaaggtgcctgggagaacgtgccggagctgaccgaccacgcctggtcggcg
ctgagcgagcgcttcaagctgatcaccgacaagcacccgaagctggagaagaccaacaac
cgcaaacacctgggaaccctgggaaccggcaaccacttcatcgaggtctgcctggatgaa
gccaaccgcgtgtggttcatgttgcacagcggatcacgcggcgtgggtaacgccatcggt
aacctgttcatcgaactggcccaggccgatatgcgtcagcacatcgccaacctgccgcac
cgcgacctggcctacttcgaagaaggcagccagcacttcaacgactacgtggaagccgtg
ggctgggcgcaggacttcgccaagcagaaccgcgcactgatgatgcacgcggtgatcgcg
gcggcacgaggcgtgatcagcaagccgttcgatgtggcgctggaagcggtgaactgccac
cacaactacgtgcagaaggagcgccacttcggcgaagaggtgctggtaacgcgaaaaggt
gcggtgtcggcgaagaagggtgagctggggatcatccccggctccatgggggccaagagc
ttcatcgtgcgcggcctggggaacgaggaagcgttctgctcctgcagccacggcgccggc
cgaaccatgagccgtaccaaggcgaagaagctgttcaccgtggacgaccagatcaaggcc
acggctcacgtcgaatgccgaaaggacgccgacgtgatcgacgaaatcccgatggcctac
aaggacatcgaccaggtaatggacgcccagcgcgagctggtggaagtgatgcataccctg
cgacaggtggtatgcgtgaaaggatag
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