Pseudomonas khazarica: JLK41_08360
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Entry
JLK41_08360 CDS
T07269
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pkh
Pseudomonas khazarica
Pathway
pkh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JLK41_08360 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkh03019
]
JLK41_08360 (rne)
03009 Ribosome biogenesis [BR:
pkh03009
]
JLK41_08360 (rne)
Enzymes [BR:
pkh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JLK41_08360 (rne)
Messenger RNA biogenesis [BR:
pkh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JLK41_08360 (rne)
Ribosome biogenesis [BR:
pkh03009
]
Prokaryotic type
rRNA processing factors
JLK41_08360 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QTS88160
LinkDB
All DBs
Position
complement(1788643..1791681)
Genome browser
AA seq
1012 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GSERHGFLPLKEISREYFSKAPEGGRVNIKDVLKEGQEVIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLDAPADMGLIVRTAGLGRSSEEMQ
WDLDYLLQLWSAIKEASTSRPAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEAL
SFIQQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSI
DINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEK
VREALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLA
ILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPH
FEVQRLRDDSPEALSSQTSYEIAATTEAEDAAAHPAAATRTLVRQEAAIKAAPRSNAPVA
AEPQAQAPLAPVSAPEPSLFKGLVKSLVSLFAGKEEEVQPAVVEKKSKERPPREERRNGR
QQSRNRGGRRGDDERKPREERAPREERQAREPREERQPREERAPREERAPREGQENRRER
KPREERAPREERVRELREPLDAGNEQRDEQRAERQPRGERQERQRPPREERQPRAEQAEA
VQDEALPNEEQLQDDEQGNAEGERPRRRSRGQRRRSNRRERQRDADGNLIESAENSEAAG
NDAQAAPPVAVATAAAVVAESVDSSEAVASEAPATEAPAVEAVEAEAPAAQPVEAPAEAP
ASDVVESAVVAEAAVEAAPAAAAEEPAAVEAPAVEPVAQPEPVVEAAQEPAPAVAEEVAP
AAEAVPANATGRASNDPREVRRRQREAERLAREAAEAAAAAPVEQNEPVVAESAPVEEPS
ATASESEEAAPAVEPSAEAAPAASEQVASEAVEQAQPEEEAAAEKEEIKPQV
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcattaacgcgactcagcccgaagagttgcgtgttgccctggtagat
ggccaaaaactctacgatctggacatcgagtccggtgcccgcgaacagaagaaggccaac
atctacaaaggccgcatcacccgcgtcgaacccagccttgaagccgccttcgtcgatttc
ggttccgaacgccacggcttccttcccctcaaagaaatctctcgcgaatacttctccaag
gcccctgaaggcggccgcgtcaacatcaaggacgtactcaaggaaggccaggaagtcatc
gtccaggtcgagaaggaagaacgcggcaacaagggcgcggccctgaccaccttcatcagc
ctggccggccgctacctggtcctgatgccgaacaacccgcgcgcaggtggcatcagccgt
cgcatcgaaggcgaagagcgcaacgaactgcgtgaagcgctcaatggcctcgacgctccg
gccgacatgggcctgatcgtgcgcaccgccggcctgggccgctccagcgaagaaatgcag
tgggacctcgattacctgctgcaactgtggagcgccatcaaggaagcctccaccagccgc
cctgccccgttcctgatctaccaggaatccaacgtcatcatccgcgccatccgcgactac
ctgcgccaggacatcggcgaagtgctggtcgacagcgtcgaagcccaggaagaagccctg
tccttcatccagcaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagc
gtgccgctgttcaaccgcttccagatcgaaagccagatcgaaaccgccttccagcgtgaa
gtgaagctgccgtccggcggttccatcgtcatcgacccgaccgaagccctggtgtccatc
gacatcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagacc
aacctggaagcggccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctg
atcgtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgccgtggaagagaaa
gtgcgcgaagccctggaagccgaccgcgcccgcgttcaggttggccgcatctcgcgcttc
ggcctgctggaaatgtctcgtcagcgcctgcgtccgtccctcggcgagaccagcggcatc
gtttgcccacgctgcaacggtcaaggcatcatccgcgacgtcgaatccctgtcgctggcc
atcctgcgcctgatcgaagaagaagcgctgaaggatcgcaccgccgaagtccgcgcccag
gtaccgatcccggtcgccgccttcctgctcaacgagaagcgcaactcgatcaccaagatc
gaactgcgtacccgcgcgcgcatcgtgattctgccgaacgatcacctggaaacgccgcac
tttgaagtccagcgcctgcgtgacgacagtccggaagccctgagcagccagaccagctac
gaaatcgccgccaccaccgaggccgaggacgcagccgcccaccccgccgccgccacccgc
accctggttcgccaggaagccgcgatcaaggccgcaccgcgcagcaacgcgccggtcgcc
gccgagccgcaggcgcaggcgccgctggcccccgtcagcgcaccggagccgagcctgttc
aagggcctggtgaagtcgctggtcagcctgttcgccggcaaggaagaagaagtccagccg
gcggtggtcgagaagaagagcaaggagcgtccgccgcgcgaagagcgtcgcaacggtcgc
cagcagagccgtaaccgcggcggtcgccgtggtgacgacgagcgcaagcctcgtgaagag
cgcgctccgcgtgaagagcgtcaggcccgcgagccccgtgaagagcgccagccgcgcgaa
gagcgtgctccgcgtgaagaacgcgcaccgcgcgaaggccaggagaaccgtcgcgagcgc
aagccgcgcgaagagcgtgccccgcgtgaagagcgcgtgcgcgaactgcgcgagccgctg
gacgctggcaacgagcaacgcgacgagcagcgcgccgagcgccagccacgcggcgagcgc
caggagcgtcagcgtccgccacgcgaggagcgtcagccgcgcgccgagcaggccgaggcc
gtacaggacgaagcgctgccgaacgaagagcagctgcaagacgacgagcagggtaacgct
gaaggcgagcgcccgcgtcgtcgctctcgcggtcagcgtcgccgcagcaaccgtcgcgag
cgtcagcgtgatgccgatggcaacctgatcgagagcgccgagaacagcgaagccgctggc
aacgacgcccaggccgcccccccggtcgcagtcgccactgccgctgcggtcgtagcagaa
agcgtcgacagcagcgaagccgtcgccagcgaagcgccggccactgaagcgccagcagtc
gaggccgtcgaggctgaagcgccggctgcacagccggtcgaggcgccagccgaagcccca
gcgagcgacgtggtcgagagcgctgtggtcgccgaagcggcggtcgaggcagcccctgct
gctgcagccgaagagccggcagccgtcgaagcacctgctgtcgagccggttgcacagccc
gagccggtcgtcgaagccgcccaggaacctgctccggcagtagccgaagaagtcgctccg
gcagcggaagcagtcccggccaatgccaccggccgtgcctcgaacgacccgcgcgaagtg
cgtcgtcgtcagcgcgaagccgagcgcctggcccgtgaagccgccgaagctgccgccgcc
gcaccggtcgagcagaacgagccggtagtcgcggaaagcgccccggttgaagagccgagc
gccactgcaagcgaaagcgaagaggcagcccctgccgtcgagccgagcgctgaagcagcc
cctgctgccagcgagcaggttgcgagcgaagcggtagaacaggcacagccggaagaagaa
gcggccgcagagaaggaggagatcaaacctcaggtttga
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