Ectopseudomonas khazarica: JLK41_13600
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Entry
JLK41_13600 CDS
T07269
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pkh
Ectopseudomonas khazarica
Pathway
pkh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JLK41_13600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkh03019
]
JLK41_13600
03009 Ribosome biogenesis [BR:
pkh03009
]
JLK41_13600
Enzymes [BR:
pkh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JLK41_13600
Messenger RNA biogenesis [BR:
pkh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JLK41_13600
Ribosome biogenesis [BR:
pkh03009
]
Prokaryotic type
rRNA helicases
JLK41_13600
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
TrkA_N
HrpB7
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QTS84379
LinkDB
All DBs
Position
complement(2848094..2849773)
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AA seq
559 aa
AA seq
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MTQETGGFAALGLHPHILAALTAVGYEEPSPIQAQAIPVILAGHDMIGQAQTGTGKTAAF
ALPLLSKIDTAKREPQVLILAPTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLK
AIRQGAQVIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPES
RQSVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVLRLL
EVEEFDALIAFVRTKQATLDLAAALEAKGFKAAALNGDIAQAQRERVIDSLKDGRLDIVV
ATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVGEVKLPNPQQVLDARIKKLTASLAPLVADAEASHGDLLDRLTADIGCSPRAL
AAALLKKATNGQALDLASVEREQPLVPGVGAPRERRERDTDRGGERGEYRERRAPMPLAE
GRVRCRTALGNRDGIAAKNLLGAILNEGGLAREAIGRIQIRETFSLVELPEEGLDRLLGK
LKDTRVAGKALKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcgctcggacttcatccccatattctcgccgct
ctgaccgccgtcggttacgaagagccgtcgccgatccaggcgcaggccattccggtgatc
ctcgcgggccacgacatgatcggccaggcgcagaccggtaccggcaagacggccgcattc
gcactgccgctgctgtccaagatcgacacggccaagcgtgagccgcaggtcctgatcctg
gcgccgacccgcgagctggccctgcaggtggccaccgccttcgaaacctactccaagcag
atgccgggcgtgaacgtcgttgccgtctacggtggcgcaccgatgggcccgcagctcaag
gccattcgccagggcgcgcaggtcatcgtcgccaccccgggccgtctggtcgaccacctg
cgtcgtgacgagaaagtgctgtccaccattcagcacctggtcctcgacgaagccgacgag
atgctcaagctgggcttcatggacgatctggaaatcatcttcgaagccatgccggaaagc
cgccagagcgtgctgttctccgccacgctgccgcactcgattcgcgccatcgccgagaag
cacctgcgcgagccgcagcacatcaagatcgcggccaagacccagaccgtctcgcgtatc
gagcaggcgcacctgatgatccacgccgatcagaagaccaacgccgtgctgcgcctgctg
gaggtcgaagaattcgacgcgctgatcgccttcgtgcgtaccaagcaggccaccctggac
ctggccgccgcgctggaagccaagggtttcaaggctgccgcattgaacggcgatatcgcc
caggcacagcgtgagcgcgtgatcgactcgctcaaggacggtcgcctggacatcgtcgtc
gccaccgacgtggcggcgcgtggtatcgacgtaccgcgcatcacccacgtgttcaacgtc
gacatgccgtacgacccggagtcctacgtgcaccgtatcggtcgtaccggccgtgctggt
cgcgatggccgtgcgctgctgctggtcacgccgcgtgagcgtcgcatgctgcaggtgatc
gagcgtgtcaccgggcagaaggtcggcgaggtcaagctgcccaacccgcagcaggtgctg
gatgcccgcatcaagaagctgaccgccagcctggcgccgctggttgccgatgccgaggcc
agccatggcgatctgctcgaccgtctgaccgccgatatcggctgcagcccgcgtgccctg
gcggcagcgctgctgaagaaggccaccaatggccaggccttggatctggccagtgtcgag
cgtgaacagccgctggtgccgggtgtgggcgcaccgcgcgagcgccgtgagcgcgatacc
gatcgcggtggcgagcgtggcgaataccgcgagcgtcgtgcgccgatgccgctggccgag
ggtcgcgtgcgttgccgtaccgcactgggcaaccgtgacggcatcgccgccaagaacctg
ctgggcgcgatcctcaacgagggcggcctggcccgtgaagccatcggccgtatccagatc
cgcgaaaccttcagcctggtcgaactgccggaagagggcctggatcgcctgctcggcaag
ctcaaggacacccgcgtggccggcaaggcgctgaagctgcgtcgctaccgcgaggactga
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