Ectopseudomonas khazarica: JLK41_15200
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Entry
JLK41_15200 CDS
T07269
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pkh
Ectopseudomonas khazarica
Pathway
pkh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pkh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JLK41_15200 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkh03400
]
JLK41_15200 (recB)
Enzymes [BR:
pkh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JLK41_15200 (recB)
DNA repair and recombination proteins [BR:
pkh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JLK41_15200 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
PaaX_C
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QTS84675
LinkDB
All DBs
Position
complement(3183886..3187518)
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AA seq
1210 aa
AA seq
DB search
MSAVQRPLALRFPLHGSRLIEASAGTGKTYTISALYLRLILCHGGDAAFAEPLLPPQILV
VTFTDAATRELRDRIRARLVEAASVFRGDGQGDALLATLRDDFDVAQWPDCARRLELAAQ
WMDEAAVSTIHGWCQRMLREHAFDSGSLFSQTLETDHSELLAEVVRDYWRQHCYPLQGAA
LNWVAQQWGTPDGLGVRLRPLLGEAAEVSPQTLGVLLDQALSAREVELAALKAPWPEWIE
ELQLLLDQAVADKQVDARKIQARYYNPWLHKLREWASGEEAVVDLGTGFKRLTPDGLAEA
WKGEAPQHPALLAMAELEARLGALSDPGEAALRHAAAWVHARFDWEKRQRAEMGFDDMLT
RLDVALQGENGPRLAEVIRRQFPVAMIDEFQDTDPLQYRIFDTLYQVEANREDCGLFMIG
DPKQAIYSFRGADIHTYLRARRATHGRHYNLETNFRSSQAMVDAVNALFLAAERRETGAG
AFLLRDDLPFIEVGAQGRKECWTVQGQEQPALTLWHLSTDEPLSKKAYVEALAGAAASEI
VALLDQGQKQRAGFLRGGELSALQPSDIAVLVRDFSEAQAIRSELGARGVRSVYLSDKDS
VFAAQEARDLLLWLRACAEPDQDRPLRAALASATLGLPLSELECLNLDERSWERRVMQFR
GYRQCWQRQGVLPMLRLLLQDFSLPQRLMGQDDGERVLTNLLHLAELLQQASSELDGEQA
LIRHLGELLTGEGQGADEQVLRLESDEALVRVVTIHKSKGLEYPLVFLPFICGFRPLDEK
KPLLVQDGERRRVLLKADEEAFERAERERLGEDLRLLYVALTRARHACWLGVADLKIGNA
RKSRLHQSALGYLLGGGEALAQSADLEGWLRAFGSAAGTRLQAPPEVSDTRYQPQSAAAF
EAQWRTPVRRAAEHWWIASYSALRLDEGEQRSAQRHEDAAPDSAAIQNATDDEGAVLDLS
GMPVSAQGLHRFPRGPSPGTFLHGLLELAASEGFAHCLEQPEVMRDLLARRCQRRGMQGW
IEPLQHWLAQLLAQPLRLAEGSVASLAQLDDYQSELEFWFEARQVDVRRLDALVQRFELP
GLARQPLRADTLNGMFKGFIDLTFEYQGRYYVLDYKSNWLGADDSAYTTEAMAEAVASHR
YDLQYVLYVLALHRQLRLRLADYDYDQHLGGALYLFLRSPHNGQYLARPPRALIEQLDAL
FVGDAGEVPA
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgttcaacgtccgctggccctgcgctttccgctgcacggcagtcgcttgatc
gaggccagtgccggcacgggcaagacctacaccatttccgccctgtacctgcggctgatc
ctctgccatggcggtgacgcggcgttcgccgaacccttgctgccgccgcagatcctggtg
gtgaccttcaccgacgccgccacccgtgagctgcgtgaccgcatccgtgcgcgcctggtg
gaggcggcgagtgtgttccgcggcgacggccagggcgatgccttgctggcgacgctgcgc
gatgacttcgacgtcgcccagtggcccgattgcgcccggcgcctggagctggccgcgcag
tggatggacgaggcggccgtctccaccattcatggctggtgccagcgcatgctgcgtgag
catgccttcgacagcggcagcctgttcagccagaccttggagaccgatcacagcgagctg
ctggccgaggtcgtgcgcgactactggcggcagcattgttaccccctgcagggcgcggca
ctgaactgggtcgcacagcagtggggcacgccggacgggcttggcgtgcgcctgcgcccg
ttgcttggggaggcggccgaggtttccccgcaaacgctcggcgtcttgctcgaccaggca
ttgagcgcccgcgaagtcgagctggcggcgctgaaggcgccctggccggaatggatcgaa
gagctgcagctgttgctcgaccaggccgtcgccgacaagcaggtggacgcgcgcaagatc
caggcgcgctactacaacccgtggctgcacaagctgcgggagtgggcgagcggcgaggag
gccgtggtcgatctgggaaccggcttcaagcgcctgacgcccgatggcctggcggaagcc
tggaagggcgaggcgccgcagcatccggcactgctggccatggccgagctggaggcgcgc
ctgggcgcactgagcgatccgggcgaggcggcgttgcgtcatgccgccgcctgggtgcac
gcgcgtttcgactgggagaaacgccagcgcgccgagatgggcttcgacgacatgctcacc
cgcctcgatgtcgcgttgcagggcgagaacgggccgcgcctggccgaggtcatccgccgc
cagttcccggtcgcgatgatcgacgagttccaggacaccgatccgctgcagtaccgcatc
ttcgacaccctctaccaggtcgaggccaaccgcgaggactgcgggctgttcatgatcggc
gaccccaagcaggccatctattccttccgcggcgccgacatccacacctacctgcgcgca
cgccgcgcgactcatgggcgccactacaacctggaaaccaacttccgctccagccaggcc
atggtcgatgcggtgaatgcgctgttcctggcagcggagcgacgtgaaaccggcgccggc
gccttcctgctacgtgatgatctgccgttcatcgaggtcggtgcgcagggccgcaaggaa
tgctggacggtccagggccaggagcagccggcgctgacactgtggcacctgagcacggat
gagccgctgtcgaagaaggcctacgtggaagcgctggcgggtgccgccgccagcgagatc
gtcgcgctgctcgatcaggggcagaagcagcgggccggcttcctgcgcggcggtgaattg
agcgcgctgcagcccagcgacattgccgtgctggtgcgtgatttcagcgaggcgcaggcg
attcgcagtgagctgggcgcgcgcggggtgcgcagcgtctacctgtcggacaaggattcg
gtattcgccgcccaggaggcgcgtgacctgctgctgtggttgcgcgcctgcgccgagccg
gatcaggaccgcccgctgcgtgcggccctggccagcgccacgctgggcttgccactgagc
gagctggagtgcctcaacctcgatgagcgcagctgggagcgtcgcgtcatgcagtttcgc
ggctatcgccagtgctggcagcgccagggcgtgttgccgatgctgcgcctgctgctgcag
gacttcagcctgccgcaacgcctgatggggcaggacgatggcgagcgggtgctgaccaac
ctgctgcacctggccgagctgttgcaacaggcctccagcgaactggacggcgagcaggcg
ctgatccgccacctcggcgagctgctgaccggcgaggggcagggcgctgacgaacaggta
ttgcgcctggaaagcgacgaggcgctggtgcgggtggtgaccatccacaagtcgaagggc
ctggagtatcccctggtattcctgccattcatctgcggcttccgcccgctggatgagaag
aagccgctgctggtacaggacggtgaacgccgccgcgtgctgctcaaggcggacgaggag
gccttcgagcgtgccgagcgagagcgtctgggcgaggacctgcgcctgctctacgtggcg
ctgacccgcgcgcggcatgcctgctggctgggtgtggcggatctgaagatcggcaacgcc
aggaagtcgcggctacaccagtccgcactcggctatctgttgggcggtggtgaggcgctg
gcgcaaagcgccgatctcgagggctggttgcgcgccttcggcagcgctgccggcactcgt
ctgcaggcgccgcccgaggtgagcgacacgcgctatcagccacaatcagccgctgccttc
gaggcgcaatggcgaacgccggtgcgacgtgcggccgagcactggtggatcgcctcgtac
agtgcactgcgcctggacgagggcgagcagcgcagcgcccagcgtcacgaagatgcggcg
ccggacagcgcggccatccagaacgccacggatgatgaaggcgcggtgctggacctgtcc
ggcatgccggtgtctgcgcagggcttgcaccgtttcccgcgcgggcccagcccaggcacc
ttcctccacggattgctcgagctggccgccagcgaagggttcgcgcactgcctcgagcag
cccgaggtcatgcgtgacctgctggcccgacgctgccagcgacggggcatgcagggctgg
atcgagccgttgcagcactggctggcgcaactgctggcgcagcccttgcgcctggccgaa
ggcagcgtggccagcctggcgcagctggatgactaccagtcggagctggagttctggttc
gaggcgcgccaggtcgatgtgcgacgcctcgatgcgctggtgcagcgcttcgagctgccc
ggcctggcccgccagccgctgcgggccgacacgctcaatggcatgttcaagggattcatc
gacctgacgttcgagtatcaggggcgttattacgtgctcgattacaaatccaactggctg
ggcgctgacgacagcgcatacaccaccgaggcgatggccgaggcggtggccagtcaccgt
tacgacctgcagtacgtgctttatgtgctcgccctgcaccggcagctgcgtttgcggctg
gccgactacgactatgaccagcatctgggcggcgccctctatctattcctgcgctcgccg
cacaacgggcagtacctggcccgtccgccacgggcactgatcgagcagctcgacgcgctc
tttgtcggcgatgccggggaggtgccggcatga
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