Ectopseudomonas khazarica: JLK41_19980
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Entry
JLK41_19980 CDS
T07269
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pkh
Ectopseudomonas khazarica
Pathway
pkh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JLK41_19980 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkh03019
]
JLK41_19980 (pnp)
03016 Transfer RNA biogenesis [BR:
pkh03016
]
JLK41_19980 (pnp)
Enzymes [BR:
pkh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JLK41_19980 (pnp)
Messenger RNA biogenesis [BR:
pkh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JLK41_19980 (pnp)
Transfer RNA biogenesis [BR:
pkh03016
]
Prokaryotic type
tRNA degradation factors
JLK41_19980 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_2
ANAPC1
S1_2
Motif
Other DBs
NCBI-ProteinID:
QTS85575
LinkDB
All DBs
Position
complement(4243576..4245684)
Genome browser
AA seq
702 aa
AA seq
DB search
MNPVIKQFKFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKSADPSKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDVAAMIGTSAALAVSGIPFNGPIGAARVAFHPDTGYLLNPNYEQLKASSLDMVV
AGTETAVLMVESEAQELTEDQMLGAVLFAHQEFQAVIQAVKEFAAEAGKPTWNWQAPAAN
TPLLDAIRSQFGAAISQAYTITIKQDRYNRLGELRDEVVAALAGEGEGQFPADEVKAAFG
EIEYRTVRQNIVDGKPRIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGT
ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRGVAAMLPKD
DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVL
TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMN
QVIAQSRTELSANAPTMLAMKIDQDKIRDVIGKGGATIRGICEETKASIDIEDDGSIKIF
GETKEAAEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQR
VEKVTDVLKEGQEVKVLVLDVDNRGRIKLSIKDVAAAEASGV
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaagcaattcaagttcggtcagtcgaccgtaaccctcgagactggc
cgtattgcccgtcaagccagcggtgccgtgctggtgaccgtcgacaacgacgtgaccgtg
ctggtgaccgtcgtgggtgccaagagcgccgacccgagcaaaggcttcttcccgctgtcc
gtgcactaccaggagaagacctacgcagccggcaagattcctggcggcttcttcaagcgt
gaaggccgtccgagcgagaaggaaaccctgacctcgcgcctgatcgaccgtccgatccgt
ccgctgttccccgaaggcttcatgaacgaagtgcaggtcgtctgcaccgtcgtttccacc
agcaagaagaccgatccggacgttgccgccatgatcggtacctccgctgccctggccgtt
tccggcattccgttcaacggcccgattggtgccgcgcgcgtagccttccacccggatacc
ggctacctgctgaaccccaactacgagcagctcaaggcgtccagcctggacatggtcgtg
gccggtaccgaaaccgccgtactgatggtcgagtcggaagcccaggagctgaccgaagac
cagatgctcggtgccgtactgttcgcccaccaggaattccaggccgtgatccaggccgtc
aaggaattcgctgccgaagctggcaagccgacctggaactggcaggctccggccgccaac
actccgctgctggacgccatccgcagccagttcggcgccgccatcagccaggcctacacc
atcaccatcaagcaggaccgctacaaccgtctgggcgagctgcgtgatgaagtcgttgcg
gccctggccggcgagggcgaaggtcagttcccggctgacgaagtcaaagccgctttcggc
gagatcgaataccgcaccgttcgccagaacatcgtcgatggcaagccgcgtatcgacggt
cgcgacacccgcaccgtgcgtccgctgaagatcgaagtcggcgtgctggacaagacccac
ggttcggcgctgttcacccgtggtgaaactcaggcgctggtcgtcgccaccctgggcacc
gcccgcgacgcacagctgctggataccctggaaggcgagaagaaagaccccttcatgctg
cactacaacttcccgccgttctcggtcggtgagtgtggtcgcatgggtggcgctggccgc
cgcgaaatcggtcacggccgcctggcccgtcgtggcgtcgctgccatgctgccgaaggac
gacgagttcccgtacaccatccgtgtggtatcggaaatcaccgagtccaacggttcgtcc
tccatggcttcggtctgcggcgcttccctggcgctgatggacgccggtgtgccgatgaag
gcgccggttgccggtatcgccatgggtctggtgctggaaggcgagaagttcgccgttctg
accgacatcctcggtgacgaagaccacctgggcgacatggacttcaaggtagccggtacc
gccaagggcgtcaccgcgctgcagatggacatcaagatccagggcatcaccgaagagatc
atggagcaggcgctggagcaggcgctggaagcccgtctgaacatcctcggccagatgaac
caggtcatcgcccagtcgcgtaccgagctgtcggccaacgccccgaccatgctggcgatg
aagatcgaccaggacaagatccgcgacgtgatcggcaagggtggcgccaccatccgtggt
atctgcgaagagaccaaggcttcgatcgacatcgaagatgacggctcgatcaagatcttc
ggcgaaaccaaggaagcggccgaggctgccaagcagcgcgttctggccatcaccgcggaa
gccgagatcggcaagatctacgtcggcaaggtcgagcgcatcgtcgacttcggtgccttc
gtcaacatcctgccgggcaaggacggtctggtgcacatctccatgctgagcgatcagcgc
gtggagaaggtcaccgacgtactgaaggaaggccaggaagtgaaggtactggttctggac
gtggacaaccgcggccgtatcaagctgtcgatcaaggacgtagcggccgccgaggcctcc
ggcgtctaa
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