Ectopseudomonas khazarica: JLK41_20695
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Entry
JLK41_20695 CDS
T07269
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pkh
Ectopseudomonas khazarica
Pathway
pkh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JLK41_20695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkh03019
]
JLK41_20695
Enzymes [BR:
pkh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JLK41_20695
Messenger RNA biogenesis [BR:
pkh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JLK41_20695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
CMS1
AWPM-19
Motif
Other DBs
NCBI-ProteinID:
QTS85714
LinkDB
All DBs
Position
complement(4397065..4398417)
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AA seq
450 aa
AA seq
DB search
MTFASLGLIEPLLRTLTELDYQTPTPVQSQAIPAVLKGRDLMAAAQTGTGKTAGFALPLL
QRLTLEGPQVASNSVRALVLTPTRELAEQVLQSFQAYGQHLPLSSYAVYGGVSINPQMMK
LRKGVDVLVATPGRLLDLYRQNALKFTQLQTLVLDEADRMLDLGFARELDELFSALPKKR
QTLLFSATFSDAIRQMAGELLRDPLSVEVSPRNAAAKSVKQWLIPVDKKRKSELFLHLLE
QKRWGQVLVFAKTRKGVDQLEQELLAMGVAADSIHGDKPQPSRLRALERFKAGEVQILVA
TDVAARGLDIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSSGEAISLVCADEVELLAAIE
RLIRQVLPRREEADFIPDHRVPQTTIDGQVLKKPKKPKQKLIPGAGGAAKSGGKGNIHLG
RWFEEEDAKPKAKAVRKVPSFGSKPKGGKK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgcctccctcggtttgatcgagccgctgctgcgtaccctcaccgaactcgac
taccagaccccgacgccggtgcagagccaggccattcccgccgtgctcaaggggcgcgac
ctgatggcggcggcgcagaccggcaccggcaagaccgccggcttcgccctgccgttgctg
cagcgcctgaccctggagggcccgcaggtggccagcaactcggtgcgcgcactggtgctg
acgccgacccgcgagctggccgagcaggtgctgcagagcttccaggcctacggccagcat
ctgccgctgagcagctatgcggtgtacggcggggtcagcatcaacccgcagatgatgaag
ctgcgcaagggcgtcgatgtgctggtggccacgccggggcgactgctcgacctgtaccgg
cagaacgcgctgaaattcacccagttgcagaccctggtgctggatgaggccgaccgcatg
ctcgacctcggcttcgcccgcgagctggacgagctgttcagcgcgctgccgaagaagcgc
cagaccttgctgttctccgccaccttctccgacgccatccggcagatggccggcgagctg
ctgcgcgacccgctgtcggtggaagtcagcccgcgcaacgccgcggccaagagcgtcaag
cagtggttgatcccggtggacaagaagcgcaagagcgagctgttcctgcacctgctcgag
cagaagcgctggggccaggtgctggtgttcgccaagacccgcaagggggtcgatcagctg
gagcaggagctgctggccatgggcgtggcggccgactcgatccatggtgacaagccgcaa
ccgagccgcctgcgcgcactggagcgcttcaaggccggcgaggtgcagattctggtggcc
accgacgtggccgcacggggcctggatatcgatgacctgccgctggtggtcaacctcgac
ctgccgatcaacgccgaggattacgtgcaccgcatcggccgtaccggccgcgccggcagc
agcggcgaagccatttccctggtctgcgccgacgaggtggagctgctcgccgccatcgaa
cggctgatccgtcaggtgctgccgcgtcgcgaggaggcggatttcatccccgaccaccgg
gtgccgcagaccaccatcgatggccaggtgctgaagaagccgaagaagcccaagcagaag
ctgatccccggtgcgggcggcgcggccaagagcggcggcaagggcaatatccacctcggc
cgctggttcgaggaagaagacgccaagccgaaggccaaggccgtgcgcaaggtgccgagc
ttcggcagcaagcccaaaggcggcaagaagtag
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