Ectopseudomonas khazarica: JLK41_24800
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Entry
JLK41_24800 CDS
T07269
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pkh
Ectopseudomonas khazarica
Pathway
pkh03420
Nucleotide excision repair
pkh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pkh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JLK41_24800 (uvrD)
03430 Mismatch repair
JLK41_24800 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkh03400
]
JLK41_24800 (uvrD)
Enzymes [BR:
pkh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JLK41_24800 (uvrD)
DNA repair and recombination proteins [BR:
pkh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JLK41_24800 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
JLK41_24800 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_11
DUF3553
Motif
Other DBs
NCBI-ProteinID:
QTS86479
LinkDB
All DBs
Position
5275078..5277261
Genome browser
AA seq
727 aa
AA seq
DB search
MQNDPELLLASLNDAQVQAVAAPLGRQLVLAGAGSGKTRVLVHRIAFLIQAMGASPHSIL
SVTFTNKAAAEMRQRIEDMLGHSPAGMWVGTFHGLAHRLLRAHWQEAGLAENFQILDSDD
QQRLIKRVIRDLGLDEQRWPAKQAQWFINGQKDEGLRPAHIQAGGDLFLATMRGIYEAYE
AACARTGVIDFAELLLRALDLWRDKPGLLEHYQRRFRHILVDEFQDTNAVQYAWLRFLAK
GGDSLMVVGDDDQSIYGWRGAKIENIQQFSSDFPDTQLIRLEQNYRSTAGILKAANALIA
NNNGRLGKELWTDGSDGEPLALYAAFNEHDEARYVVESIEDALRKDGLKRSEIAILYRSN
AQSRVLEEALLREKIPYRIYGGQRFFERAEIKNAMAYLRLLDGRGNDAALERIINVPARG
IGEKSIETIREYARAHDVHMWQAIRLMLANKALPGRASSALSGFIELIEGLAEKVLAMPL
HQMTQVVIEQSGLLAYHEAEKGEKGQARVENLEELVSAARTFENDEDDELTPLQAFLTHA
SLEAGDTQAAENEDSIQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQKLVISYAETRRLYGSETYNKVSRFVREIPAPLIQEVRLNNSVSRPVNTSS
MGGSSLFAGSAVPQTPFNLGQRVRHSLFGEGTILNFEGAGAQARVQVNFENEGSKWLMLA
YAKLEAC
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacgaccccgaactcctcctcgcttcgctcaacgacgcccaggtccaggccgtg
gctgccccgctcggccgccaactggtactggccggtgccggctccgggaaaacccgtgtg
ctggtgcaccgcatcgccttcctgattcaggccatgggtgcttcgcctcattcgatcctg
tcggtgaccttcaccaacaaggccgccgccgagatgcgccagcgcatcgaggacatgctc
gggcacagcccggccggcatgtgggtcggcaccttccacggcctggcccaccgcctgttg
cgcgcgcactggcaggaagccggcctggccgagaacttccagattctcgactccgacgat
cagcaacgcctgatcaagcgggtgatccgcgacctcggcctggacgaacagcgctggccg
gccaagcaggcgcagtggttcatcaatggccagaaggacgagggcttgcgcccggcgcac
atccaggcgggcggcgacctgttcctcgccaccatgcgaggcatctacgaagcctacgag
gcggcctgtgcccgcaccggggtgatcgacttcgccgagctgctgctgcgcgcgctcgac
ctctggcgcgacaagccgggcctgctcgaacactaccagcggcgcttccgccatatcctg
gtcgacgagttccaggacaccaacgccgtgcagtacgcctggctgcgtttcctcgccaag
ggcggcgacagcctgatggtggtcggcgacgacgaccagtcgatctacggctggcgcggc
gcgaagatcgagaacatccagcagttctccagcgatttccccgacacccagctgatccgc
ctggagcagaactaccgctccacagccggcatcctcaaggccgccaacgccctgatcgcc
aacaacaacgggcgcctgggcaaggagctgtggaccgacggcagcgacggcgagcccctg
gcgctgtacgccgcgttcaacgagcacgacgaagcccgctacgtggtggagagcatcgag
gacgccctgcgcaaggacggcctcaagcgcagcgagatcgccatcctctatcgctccaac
gcccagtcgcgggtgctggaagaggcgctgctgcgcgagaagatcccctaccgcatctac
ggcggccagcgcttcttcgagcgcgccgagatcaagaacgccatggcctacctgcgcctg
ctcgacggccgcggcaacgatgccgcgctggagcgcatcatcaacgtgccggcgcgcggt
atcggcgagaagagcatcgagaccattcgcgaatacgcccgcgcgcatgacgtgcacatg
tggcaagcgatccgcctgatgctcgccaacaaggccctgccgggccgcgcttccagcgcc
ctgagcggcttcatcgagctgatcgaaggcctggcggagaaggtcctggcgatgcccctg
caccagatgacccaggtggtcatcgagcagagcggcctgctcgcctaccacgaagcggaa
aaaggcgagaaaggccaggcccgcgtggagaacctcgaggaactggtcagcgcggcacgc
accttcgagaatgacgaagacgacgagctgaccccgctgcaggccttcctcacccacgcc
tcgctggaggccggggacacccaggccgccgagaacgaggacagcatccaactgatgacc
ctgcacagcgccaagggcctggaattcccgctggtgttcctggtgggcatggaagagggt
ctgttcccgcacaagatgagcctggaagaaccgggccgactggaagaagagcgccgcctg
gcttatgtcggcattacccgtgccatgcagaagctggtgatcagctacgccgaaacccgg
cgtctctacggtagcgagacctacaacaaggtatcgcgcttcgtccgcgaaatacccgca
ccactgattcaggaagtccgcctgaacaacagcgtcagccgcccggtgaacaccagttcc
atgggtggcagcagcctgttcgccggcagcgccgtaccgcagacgcccttcaacctgggg
caacgcgtgcggcacagcctgttcggcgagggcaccatcctcaatttcgagggtgccggc
gcacaggcgcgggtacaggtgaatttcgaaaacgaaggcagcaagtggctgatgctggcc
tatgccaagctggaagcctgttag
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