Paramormyrops kingsleyae: 111833387
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Entry
111833387 CDS
T05788
Name
(RefSeq) collagen alpha-1(V) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pki
Paramormyrops kingsleyae
Pathway
pki04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pki00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111833387
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pki00536
]
111833387
Glycosaminoglycan binding proteins [BR:
pki00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111833387
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
111833387
NCBI-ProteinID:
XP_023647368
LinkDB
All DBs
Position
Unknown
AA seq
1751 aa
AA seq
DB search
MIAADHRVADDYCEHYSPDCEVPVPESTQNQDPEPYDYPPGEDNYDYEYPYYDTDPDQVM
STARTETAEDITTKVYPTDSYDGAAYNYETYEETDLVPGSHEHVVSGGPGAETRTDIDLG
LGFRREVDLSPVPGLDKIESVVTHNMTQVVNYVDRDTEEYGNLDYGYEYGSEEYTDGHTG
TDHSSTGTGSSSSSSAGGSAGTVGGSTVVSSGSTVVSSGSTVVSSGSTVVSSGSTVVSSG
SASGVDVSIGAGAGAGAGAGAGAGAGAGAGAGTGAGAGASRIGGGATGAAGAAAGTGGSS
AGAGGGQGGTEEAEYTYNVDNFKEEDYTYYEHYTDADTDTAKQLPAEKDEFYEVVDGARG
EKGQKGEPAIIEPGMLLEGPAGPEGPTGLPGPPGSSGPPGPAGDSGERGPPGRPGIPGAD
GLPGPPGTVLMLPFRFSAGGDAGQKGPAMSAQESQMQAIMQQARLAMRGATGPMGLTGRP
GPLGPPGVNGYKGDPGDSGPQGPRGPHGSMGPTGKPGRRGRSGADGARGMPGQTGAKGER
GFDGLAGLPGEKGHRGESGAAGPPGPSGEDGERGDDGEIGLRGLPGEPGPRGLLGPKGPQ
GAPGSPGVTGMDGHPGPKGGIGPQGEPGPPGQQGNPGAQGLPGPQGHIGAPGDKGPTGKP
GLLGVAGADGPPGHPGKEGPHGEKGNMGPNGAQGPIGYPGPRGVKGADGVRGLKGTKGEK
GEEGFPGFKGDMGGKGDRGEIGAAGPRGEDGPEGPKGRAGLPGDSGPIGPFGEKGKLGIP
GLPGYQGRQGSKGSQGFQGFPGANGEKGTRGTAGKPGPRGQRGPTGPRGERGPRGPTGKP
GPKGTSGTDGPPGPSGERGLPGPQGPTGFPGPKGPPGPAGKDGLPGHPGQRGETGFQGKT
GPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGAGGKEGSKGDPGPAGPAGKD
GPPGLRGFPGERGLPGPTGSPGLKGNEGPNGPPGPAGSPGERGPAGAAGPTGLPGRPGPQ
GPPGPAGEKGTPGEKGPQGPAGRDGIQGPVGLPGPAGPLGPPGEDGDKGEVGEPGQKGSK
GDKGEHGPPGPTGPQGPIGQPGPAGADGEPGPRGQQGLFGQKGDEGPRGFLGPPGPIGLQ
GRPGSTGEKGETGDVGQMGPPGPPGPRGPSGPPGADGSQGPPGGIGNPGAVGEKGESGET
GEPGLPGDLGAPGPRGERGEKGEAGPPGAAGPPGPKGPLGDDGPKGSPGPSGIPGDPGPP
GEPGQTGLDGLPGDKGDDGEAGQPGSPGPTGEPGPSGPPGKRGPPGPIGPEGRQGERGAK
GESGLEGPQGRTGPVGPQGSPGKPGSEGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLP
GLKGDTGVKGEKGHPGLIGLIGPPGEQGEKGDRGHPGPQGASGPKGDNGIVGPAGPIGPP
GPPGLPGPSGPKGAKGSSGQTGPKGEAGVPGSPGPPGPPGDVIHPLPIQSSPKRSRRNID
ASQLMDDPDSDANYKDYDDGMEEIFGSLNSLKLEIEQMKHPLGTQNNPARTCKDLHLCHP
DFPDGEYWIDPNQGCSRDSFKVYCNFTAGGESCIYPDKKSEGTRLTSWPKENPGTWFSEF
KRGKLLSYVDSEGSPVGVVQMTFLRLLSASARQNLTYSCYQSVAWHESEQDSYDKAVRFL
GSNDEEMSHDNNPYIRALLDGCALKKGYEKTVLEIDTPKVEQLPYVDIMFNDFGEASQKF
GFEVGPVCFLG
NT seq
5256 nt
NT seq
+upstream
nt +downstream
nt
atgatcgccgctgaccaccgggtggccgatgactattgtgagcactacagccctgactgt
gaggtgccggttcctgaatccactcagaaccaggacccagagccatatgactatcctcct
ggggaagacaactatgactatgagtacccttactatgacaccgatccagaccaggtgatg
tctacggcgaggacggagacggcggaggacatcaccacaaaagtctaccccacggacagt
tacgatggggctgcatataattatgagacctacgaggaaactgatttggtcccaggatcc
catgaacatgtggtcagtggcgggccgggtgctgagacacggacagacatcgacctggga
ctaggattcagaagagaggtcgatctgagtcctgtgccaggcctggacaaaattgaatca
gttgtcacacataacatgacccaggttgtaaattatgtggaccgtgacactgaggaatat
ggcaatctggattacggatacgagtacggctcagaggaatacactgatgggcacactggt
acggaccacagctccacgggcactgggagcagctcatctagctccgcgggggggtcggct
ggtacagtgggtggatccacggtcgtgtccagcggatccacagtcgtttccagcggatcc
acggtcgtgtccagcggatccacggtcgtttccagcggatccacggtcgtttccagtgga
tctgcaagtggtgtggatgtatcaattggagctggagcaggagcaggagctggagctgga
gcaggagctggagcaggagctggagcaggagctggaacaggagctggagctggagcatcc
cgaatcggtggaggggcaactggtgcagcgggcgcagcagctggaaccggaggcagctct
gctggtgctgggggtggtcagggtggcactgaagaggcagagtacacatacaacgtagat
aatttcaaggaggaggactacacttattacgaacattacacagatgctgacactgacact
gcaaagcagctgcccgcggaaaaggatgagttctatgaagtggtcgacggcgccagaggc
gagaaggggcagaaaggagagccggccatcattgagcccggaatgctgctcgaaggccca
gctggtcctgaaggccccactggtctgcctggccccccaggatcatctggcccccctggt
ccggctggagactctggagagaggggtccccccggccgcccagggattcccggagcagat
ggcctgccaggacccccagggactgtcttgatgctgcctttccgcttcagcgctggcggg
gacgctggtcagaagggacctgccatgtcagcacaggaatctcagatgcaagccatcatg
cagcaggccaggctggctatgcgtggtgctaccggcccaatgggtctgactggacgacca
ggacctctgggcccccctggcgttaatgggtataaaggagaccctggtgattccggcccg
cagggacctcgtggtccccatggctccatggggcccaccgggaagccaggccgacgggga
cgttctggagcggatggagccagaggcatgcccgggcaaacaggagcaaagggtgagaga
ggctttgacggattggctggacttcctggggaaaagggacacagaggtgagtcaggagca
gcaggccctcctggtccatccggagaagacggtgagaggggtgacgatggagagattgga
ctcagggggctgcctggtgaaccaggacctcgtggattgctgggcccaaaaggaccccaa
ggagctcctggttctcctggggtgactggaatggatggccatcccggacccaaagggggc
attgggccacaaggtgaacctggccccccaggacagcagggaaatccaggcgctcagggt
cttccaggacctcaaggacacattggggctcctggagataagggtcccactggcaagcca
ggcctactgggagtggcgggagcggacggccctccaggtcatccaggaaaggaaggaccg
catggcgaaaaaggaaacatgggtcccaatggtgcacaaggtccgattggctatcccgga
cccagaggtgtaaagggagctgatggtgttcgtggattaaagggaactaaaggagagaag
ggagaagaaggattccctggatttaaaggagacatgggtggcaagggtgaccgaggggag
ataggagctgctggacctagaggcgaggatggaccagagggtcccaaaggccgcgctggt
cttcctggggattctggccccatcggcccgtttggggagaagggaaagcttggcattccg
ggattgccaggttatcagggaagacaaggttcaaagggctctcaaggatttcaaggattt
ccaggagccaatggagaaaaaggcacacggggaacagctggaaaaccaggcccccgtggc
cagagggggccaactggtccacgtggagaaaggggtccgaggggcccaactggaaaaccg
ggaccaaagggtacctcaggaactgacgggcctcctgggccctcgggtgaaaggggtctg
ccagggcctcaaggtccaacaggatttccaggaccaaagggtcccccggggccggctgga
aaagacgggctgccgggacatcctggacagagaggcgaaacaggtttccaaggcaaaaca
ggaccaccaggacctcctggtgttgtgggaccacagggccccacaggtgagactgggcca
atgggggagcgaggacacccaggaccacctggacccccaggagaacaaggtcttccagga
gccggtggaaaagagggatccaagggtgacccaggtcctgccggcccggcagggaaagac
ggccccccaggtttgagaggctttcctggggaacgaggcctacccggacccacgggatct
cctggtttgaaaggaaacgaaggccccaacggtccacctggaccagccggctcccctgga
gaaagaggccctgctggtgcagccggacccactggccttccgggacgtccgggaccccaa
ggtcccccgggtcccgctggagagaagggtaccccgggtgagaagggtcctcaagggcca
gctggaagagatgggattcaaggtccagttggactcccaggacctgcaggtcccctgggg
ccccctggagaggatggggataagggtgaggttggtgagccaggacagaagggcagcaaa
ggcgataaaggggaacacggtcctcccggtcccaccggtccacaaggcccaattggacaa
cctggtcctgctggagctgatggggaacctggacccagaggacagcagggactctttggg
caaaaaggcgatgaaggacccagaggcttcctaggacctcctgggccaatcggcctccag
ggacgtcctggttctactggtgagaagggtgagaccggagacgtcggccagatgggcccc
cccggcccccctggccccagaggcccctcaggaccccccggcgcagacggttcccagggg
ccacctggtggcattggcaacccaggcgctgtgggagaaaagggtgaatctggtgaaact
ggagaaccaggacttccaggagatctcggtgcaccaggtcccagaggtgaacggggtgaa
aagggcgaagctggccctcctggtgctgctgggccccctggtcccaaaggtcctcttgga
gatgacggtcccaagggcagcccgggtccaagtggaattcctggggatccaggtccccct
ggggagcctggtcaaactggtctggatgggctacctggtgacaaaggagatgatggagaa
gctggtcaacctggatctcctggccccactggagaacctggtccttctggccctcctggg
aagagaggtccacctggtcctattggacccgaaggaagacagggcgaaaggggagctaag
ggtgagtctggtctggaaggacctcaggggaggacaggcccagtcgggcctcagggatct
cctggcaagcccggctcagaaggtcttaggggaatcccaggcccagttggtgaacagggt
ctcccaggttctcctggcccagatggaccccctggaccaatgggtccacctggattacct
ggccttaagggtgacactggtgttaagggagaaaagggacaccctgggctgatagggctg
attggacctccaggagaacagggagaaaagggtgacagagggcatccaggacctcaaggt
gcatccggtcctaaaggcgacaatggtattgtgggccctgctggtcccatcggcccccct
ggaccccccggattaccaggtccttctggtccaaaaggtgctaagggctcatctggtcaa
actggtccaaagggtgaagcaggtgtcccaggatccccaggccctccaggtccccctggt
gatgtcatccacccgctgccaatccagtctagccccaagaggagcaggaggaacattgat
gccagccagctcatggacgacccggactccgatgccaattacaaggactatgacgatggc
atggaggagatctttggctcgctgaattctctgaagctggagatcgagcagatgaagcac
ccacttggcactcagaacaacccagcacgaacctgcaaggacctgcacttgtgtcatcct
gatttccctgatggtgaatactggattgaccccaatcaaggatgctcccgggattccttt
aaggtttactgtaacttcactgcagggggagagagctgcatctacccagacaagaagtct
gaaggaacaagactcacttcttggccaaaggagaatccaggcacctggttcagtgaattc
aaacgcggtaaactgctctcctatgtggactctgagggcagccccgtcggcgtggttcag
atgaccttcctgcggctcctcagcgcctcggcccggcagaacctcacgtacagctgctac
cagtcggtggcctggcatgaatcggagcaggacagctacgacaaggctgtccgcttcctg
ggctccaacgacgaggagatgtcacacgacaacaacccgtacatccgcgctctgctggac
ggctgtgcgctaaagaagggctatgagaaaacagtacttgagatcgacacgcccaaggta
gagcagttaccctacgtcgacatcatgttcaatgatttcggtgaagcctcacagaaattt
ggatttgaagtgggaccagtttgcttcctgggctga
DBGET
integrated database retrieval system
