Paramormyrops kingsleyae: 111835252
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Entry
111835252 CDS
T05788
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
pki
Paramormyrops kingsleyae
Pathway
pki04510
Focal adhesion
pki04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111835252
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111835252
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pki00536
]
111835252
Glycosaminoglycan binding proteins [BR:
pki00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111835252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
111835252
NCBI-ProteinID:
XP_023651116
Ensembl:
ENSPKIG00000001771
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MFSFVDMRTVLLLVAIQACLLAVVRCQNEDDTCVHDGQRHMDKDVWKSEPCRICVCDSGT
VLCDEIVCEELKDCPNPEIPFGECCPICPAGPIAPSGRPVGAKGQKGEPGDIADVVGPRG
PQGPMGPPGEQGPRGPRGDKGEKGSLGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGNFA
AQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGGTGPLG
PRGPPGAPGKSGEDGEAGKSGKSGDRGPQGPQGARGFPGTPGLPGIKGHRGYPGLDGTKG
ESGAVGTKGEGGSPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGSPGPAGPSGPVG
PSGAPGFPGSPGTKGEAGPTGARGPEGAQGPRGESGTPGAPGPSGTSGNSGTDGIPGAKG
SAGGPGIAGAPGFPGPRGPAGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGEIGPAGLQG
APGPAGEEGKRGSRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPQGVSG
PKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPPGSAGEDGRPGPPGPQGARGQPG
VMGFPGPKGGTGESGKPGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGQPG
PSGFQGLPGPPGPPGEAGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGSQGLQGPRG
LPGTPGTDGPKGAIGPSGPHGAQGPPGLQGMPGERGPSGIPGPKGDRGDNGEKGPEGAPG
KDGLRGLTGPIGPPGPGGPNGEKGESGPSGPSGAPGTRGAPGDRGETGPPGPAGFAGPPG
ADGQPGAKGEQGEVGQKGDAGAPGPQGPSGSPGPQGPTGVSGPKGARGAQGPPGATGFPG
AAGRVGPPGPNGNPGPAGSAGPPGKDGPKGIRGDSGPVGRQGDAGLRGPAGSPGEKGEPG
EDGPPGPDGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSTGTAGDRGPPG
PVGPPGLTGPAGESGREGNPGSDGPPGRDGATGIKGDRGNTGPVGAPGTPGALGAPGPVG
PTGKQGDRGESGAQGPAGPSGPAGARGMPGPQGPRGDKGEAGEGGERGQKGHRGFTGLQG
LPGPPGQAGDQGASGPAGPSGSRGPPGPVGPSGKDGSNGLPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPAGPGIDMSAFAGLSQPEKGPDPLRFMRADQASGNLRQHDAEVDSTLK
SLNAQIENIRSPDGTKKNPARTCRDLKLCHPDWKSGDYWIDPNQGSTIDAIKVFCNMEIG
ETCVYPRPGRIPRKNWWSSKSKERKHIWFGEMMNGGFHFNYGDDSLTPNTASIQMTFLRL
LSTEASQNLTYHCHNSVAYLDEASGNMKKALLLRGSNEVDIRAEGNSRFTYTVLEDGCTK
HTGKWGKTVIEYRSQKTSRLPIVDIAPLDIGGADQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatatgaggactgtactgctgctcgtagcaattcaagcctgtctg
ttagccgttgttagatgtcagaacgaggatgacacctgcgtgcatgacggccagcggcac
atggacaaggacgtgtggaagtcggagccgtgtcgcatctgcgtgtgcgactccgggacc
gttctctgtgacgaaatcgtctgcgaggagctaaaagactgccccaaccccgagatccca
ttcggagagtgttgccccatctgtccggctggcccgatcgcccccagtggtcggccggtt
ggtgctaaggggcagaagggagaaccaggggatattgcagatgtcgttggacctagagga
ccacaaggacctatggggcccccaggagagcagggaccacgtggtccaaggggggataag
ggcgagaagggatcccttggcccccgtggtagagatggtgagcctggtactcctggaaac
ccaggccctcccggacctcctgggcccaatggacctcctggcctcggcggaaactttgcg
gcccagatggcaggcggattcgacgagaagtccggaggtgctcagatgggtgtgatgcaa
ggaccaatgggccctatgggtccaagaggaccacctggcccgtctggagctcctggtcca
caaggtttccaaggcaaccctggcgagcccggagaacctggaggaaccggccccttgggt
ccgcgtggcccccccggggctcctgggaagtctggtgaagatggtgaagctggcaagtcg
gggaaatctggtgaccgtggacctcagggcccccagggagctcgcggattcccaggaact
ccaggcctgcctggaatcaaaggccacagaggttacccaggcctggacggcaccaagggg
gagagcggcgctgtaggaacaaagggagagggaggttcccccggagagaatggagcacct
ggacctatgggccctcgtggtctgccgggcgagaggggccgtcctggaccttcgggagct
gctggcgctcgaggaaacgacggttcgccaggaccggccggcccctccgggccggttgga
ccttctggagctcctgggttccccggatcccctggtaccaagggagaagccgggcccact
ggagcccgcgggcctgagggtgcccaggggcctcgtggcgagtctggaaccccgggggca
cccggcccatctggcacctccggtaactctggtactgacggtattcctggtgccaaagga
tctgctggtggccctggtattgcaggtgctccaggcttcccgggcccccgtggccccgca
ggacctcagggagccacagggcccctggggcccaaaggacagtcgggagatcctggtatt
ccaggattcaagggtgaagccggtccaaaaggagagattggtcctgcaggccttcaaggt
gcccctggcccagctggagaggagggaaagagaggatccagaggagaacctggcgctgcc
ggaccacttggaccccctggagagagaggtgcccccggtaaccgtggtttcccgggtcag
gacggcttggctggtcccaagggagccccaggtgagcgtggacctcagggcgtgtcgggc
cctaagggagctactggggacccgggccgtcctggagagcccggcctacctggtgcaaga
ggtctcactggtcgtcctggtgatgctggtcctcagggtaaagtcggccctcctggctct
gctggcgaggatggccgcccagggcccccaggtccccaaggagcccgcggccagcccgga
gtgatgggattccccggacccaagggtggaaccggcgagtctggcaaacctggagagaaa
ggattggctggagctccaggtctcagaggtctgcctggcaaagatggtgagacaggtgct
gccgggccaccaggcccagctggacctgcgggagagagaggagagcagggtcagcctgga
ccctctggcttccagggtctccctggacctcctggtccccctggtgaggcaggaaagcct
ggtgaccagggtgttcctggggaagctggagcagctggtgcaacgggacccagaggcgag
cgtgggttccccggagagagaggtgctgctggttctcaaggccttcagggacctcgtggc
cttcctggaacgccaggaactgatggacccaagggagccattggcccaagcgggccccat
ggtgcccaagggcctcctggacttcagggtatgcctggggagagaggaccttctggcatt
cctggacccaagggtgacagaggtgacaatggagaaaagggtcctgaaggagctcctggc
aaagatggcttaagaggtctgactgggccaatcggaccgcctggtccaggtggtcctaat
ggtgagaagggtgaatccggtccctcaggtccctcgggagcccccggtactcgcggtgcc
cccggtgaccgtggtgagactggtccacctgggcctgctggttttgctggacctcctggt
gcagatggccagcctggagcaaaaggagaacagggtgaggttgggcagaaaggtgatgcc
ggggccccaggccctcaggggccctctggatcgccgggcccccagggccctacaggtgtg
tcgggacccaaaggtgcccgtggtgctcaaggaccccctggtgccactggtttccctgga
gctgccggcagagtcggacctcctggacctaatggtaaccctggtcctgccggctccgcc
ggcccccctggcaaagatgggcccaaaggtatccgtggcgattccggcccagtagggaga
cagggtgacgctggcctgcgcggccctgccggctccccaggcgagaagggagagcccggc
gaggacggcccccccggtccagatggtccttcaggcccgcaaggtctggccggacagcga
ggtattgtgggtcttccagggcagcgtggtgagagaggtttcccaggccttccaggacct
tctggagaaccaggcaagcaaggttccactggtactgctggggaccgcggacctcctggc
cccgtgggacctcctggcttgactggacctgctggagaatctggcagagagggcaatcct
ggctccgatggacctcctggtagagatggtgctactggaatcaagggagaccgaggcaat
accggtcctgttggtgccccagggacccccggagcgcttggtgcccccggacccgttggt
cccactggcaagcagggagacagaggagagtccggcgcacaaggtcctgcaggtccgtcc
gggccagccggagccagggggatgcctggacctcaagggccacgtggagacaagggcgag
gctggggaagggggagagaggggacagaagggtcaccgaggattcacaggtctacagggt
ctgcccggacctcccggtcaagctggtgaccaaggtgcctctggaccagctggtcccagt
ggatcgaggggacctcctggccctgttggaccttcaggaaaggatggatccaacggtttg
cctggacccatcggtcctccgggtccccgtggtcgttctggagagactggtcctgccggt
cctcctggtaaccctggaccccccgggccccctggtcctgctggccctggcatcgacatg
tctgcattcgcgggcctgtcccagcccgagaagggccctgaccccctgcggttcatgagg
gccgaccaggcctccggcaacctccgccagcacgatgctgaggtggactccactctcaag
tcccttaacgcgcagattgagaacatccgcagcccagatggtaccaagaagaacccagcc
cgtacctgcagggacctcaaactgtgccaccccgactggaagagtggtgactattggatc
gaccctaaccagggctccacaatcgacgccatcaaggtcttctgcaacatggagatcggc
gagacctgcgtctaccccagacctggccgtatcccacgcaagaactggtggtccagcaag
agcaaggagcgaaagcacatctggtttggcgagatgatgaatggaggattccatttcaac
tatggagatgacagcctgacccccaacaccgctagcatccagatgaccttcctgcggctg
ctgtccacagaggcctcacagaacctcacctaccactgccacaacagcgtggcctatctg
gacgaggccagtggcaacatgaagaaggcactgttactacgtggctctaacgaggtggac
atccgtgccgagggcaacagccgcttcacctacacggtgctggaggacggatgcacgaaa
cacacagggaaatggggcaagacagtaattgaatacagatcgcaaaagacatcccgcctg
cccatcgtggatatcgcaccactggatattggcggagcggaccaggagtttggcgttgac
atcggcccagtctgcttcttgtaa
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integrated database retrieval system
