Paramormyrops kingsleyae: 111838057
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Entry
111838057 CDS
T05788
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pki
Paramormyrops kingsleyae
Pathway
pki03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111838057 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pki03021
]
111838057 (pcf11)
03019 Messenger RNA biogenesis [BR:
pki03019
]
111838057 (pcf11)
Transcription machinery [BR:
pki03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111838057 (pcf11)
Messenger RNA biogenesis [BR:
pki03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111838057 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
Motif
Other DBs
NCBI-GeneID:
111838057
NCBI-ProteinID:
XP_023656395
Ensembl:
ENSPKIG00000015149
UniProt:
A0A3B3T2W6
LinkDB
All DBs
Position
Unknown
AA seq
1571 aa
AA seq
DB search
MSDDAAREDACREYQSSLEDLTFNSKPHINMLTILAEENLHFAKDIVAIIEAQIAKAPAP
EKLPVLYLVDSIVKNVGGEYLAVFAKNIVNSFILVFEKVDENTRKSLFKLRSTWDEIFPL
KKLYALDVRVNGVDPAWPIKPLPPNVNASIHVNPKFLKPSEEVTVPSGNTQQPPNQSVVN
EKSLTQEQAIRQQLLAKQKQLLELQQKKIELELEQTKAQLAANQLVAATNPPVNPANQLG
IGARNTPIPPMQFGKPWHVMQPESKISTRDPRLNRMGPTTQLVKEQVLNKKDGHLMASSV
HPSEKKTNVPAEKTKFEKLKIPKKESHDEKAKSKSPSPLNKFQGKPKNSEMENIKTGEVN
KRDPRLRKHLHDKPDVKDDECKDKKRFSDKKERDDSTPGARSIGGRNKLLNGSTNKYERN
ETLEKLDSKTNKASMRRRSRSRSRSPLSHSPKRKDRRSPKRRMRSVSSSPPKSGKGRQLG
GKHLHPDEFSQHSNIREERAIPKKNVNEPRRQKRLLEERPVESRDSHSPRLPNEPKENAS
KRWKSGWEENKHLKQPDENLVQGKSGQGLQRHKQSWSSNQRMPVSRIPKQHRLSVDANLQ
IPDVLNSASKRDLLKKASKRLADGEISHDDFLNVAHQIKQLFQYQEEKQRSDSWDGSSED
AQFGTRKKPLLATPSTQQGSLSDAEKSYYEHKAKLRRTQVQHQGGRDHHSPYSERMQHGR
PMYEDDEQMKVDPEFQKRYGAMPEGIKVEDSVKPVCLKHEDFTKERPSSDQSSSFKNSPS
PVNFDGLSGKSPVSGFDCSANIDIEGHQMPVRESSPNQRFGIPSSCEHSVAGSDSEVQLS
MEVSSGHHDASGQGRSGQPGPLLCESPGQTPPHVLEGPHSQSGLSRYDGPKIAQRFDGQQ
PLIFEGNTNQPILDGPARPHLQGRFDNSGPGRFDGSSRFDGTQGSGRFDGAPMHKGPDRF
DSSNRYDTPAVLPGPQRFGEPQGLGRFNGPHLQQGAGRFEGPVGQQAPARFDGQSSVMFD
GPQMQTNRFDGPLRFEGPHMQQGPGRYEGRFAGPQAQQGPSRYEGPSSQQGRMRFDGPVN
QPGAIRFEHGQGQIGPMRYDGQQQGMARFDCAPSQQGAPRYCGPLNLQSQMRPLCPSMFD
NAQGQNQLSNPGPQSNFNMPNNRFAEPLNVFGAASQSFQGQQNLSQGHNFNVQAAAGTPG
FSNSFVRPVSSYYNPGAPAGNMGTAVPGGNIQQPMNMLPGLKPQIPAPYSQGQPYGQLQQ
TPVPFGQTGSQFPPESHFGQVDVNDLLSKLISTGIIKPAQTDSTTTGMNTPPQSQPAVEE
EEEEEQDDDQNVPDLTAFAIEDMKQRYDSVITKLYTGIQCYSCGMRFTASQTDVYADHLD
WHYRQNRLEKDISKKVTHRRWYYSLMDWIEFEEIADLEERAKSQFFEKVHEEVEKKTQEA
AKEKEFLSVKAAPDVVGETCEICQEQFEMYWEEEEEEWHLKNAIRVDEKTYHPSCYEDYK
NTSSFVDCTPSPNKALMENPLDVFIKEENDPSSCSSIKQEPDMQSSCTDANAEEAFQVKL
EAESQASAIIF
NT seq
4716 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgacgcggcgagggaagatgcctgtagagagtatcagtcctccctggaagat
ttgactttcaacagcaagccccacatcaacatgctgaccatacttgccgaggagaatctg
catttcgccaaggatatcgtcgctataattgaagcacaaattgccaaggcacctgcccct
gagaagcttccagttttgtacttagtggattccatcgtgaagaacgttggaggcgaatat
cttgctgtgttcgctaaaaacatagtaaactcatttatattggtttttgaaaaggtggat
gaaaacactagaaaaagtcttttcaaactgcgttccacctgggatgaaattttccctttg
aagaaactttatgcgttagatgtccgagtgaatggagttgatcctgcgtggccaataaaa
cctttgccacctaatgtgaatgccagcattcatgtgaatccaaaatttctgaagccgtct
gaggaagtaactgtaccaagcggaaatacccaacaacctccaaaccagtcggtagtgaat
gagaagagtttgacacaagaacaagcaattcggcagcaattgcttgcaaagcaaaagcag
ttgcttgaactccagcagaagaagatagagttggaacttgaacaaacaaaagcccagttg
gctgctaatcagttggtagctgcaacaaatccacctgttaatcctgcgaaccaacttggt
atcggagcgagaaacactccaattcctcccatgcagtttggtaaaccctggcatgtcatg
caaccagagagcaagatttctacaagagatcctcgcctgaatcgaatgggaccaacaaca
cagcttgttaaggagcaagtgctaaataaaaaggatggacacttaatggcatcaagtgta
catccatcagaaaagaaaacaaatgtgccagctgagaaaactaaatttgaaaagttgaaa
atacctaaaaaagaatctcatgacgaaaaggcaaaatctaaatccccttctccactaaat
aaatttcaagggaagcctaaaaattctgaaatggaaaatataaagacaggagaagtaaac
aagagagatccaagattaaggaaacaccttcatgataagcctgatgtgaaagatgatgaa
tgcaaggataagaagcgattctcagacaaaaaagaacgtgacgattccactccaggagca
agatcaataggcggaagaaataaactactcaatggttctacaaacaagtatgagagaaat
gaaacacttgaaaaattggactccaaaacaaacaaagcgagtatgaggagacgatcgcgt
tcacggtctcgttctccattgtcacattcccctaagaggaaggacaggcggtcgccgaag
aggaggatgaggagtgtctcgtcatctcctccgaaatctggcaaaggaaggcagttgggc
ggaaaacatttgcatcccgacgaattttcacagcattcaaatataagggaagagcgagct
attcccaaaaagaatgtcaatgaaccaagacgacaaaagagattactggaggaaaggcct
gttgaatcaagggactctcattcgcctcggttacccaatgaaccgaaggaaaatgccagt
aaaagatggaaaagtggatgggaagaaaacaaacatctaaagcagcctgatgaaaacctg
gtacagggcaagtcagggcaggggttacaacgacacaaacaatcgtggtccagcaaccaa
agaatgcctgtttctcgcatacctaaacagcatcgtttgagcgttgatgccaacctgcaa
atacctgatgtgctgaactctgccagtaaacgagaccttttaaaaaaggctagtaaaagg
ctggccgatggggagatatcccatgatgacttcctcaatgtggcccaccaaatcaaacag
ctttttcagtatcaagaggaaaagcaaagatcagactcatgggatgggtcaagtgaggat
gcacagtttgggaccaggaaaaaacctttattggccacaccatctacacagcaggggagt
ctgtcggatgctgaaaagtcttactatgaacataaagctaagctgagaagaacacaagtc
caacaccaaggaggtagagaccatcactcaccatacagtgagcgaatgcaacatgggaga
cctatgtatgaggatgatgagcaaatgaaagttgaccctgagtttcagaagcgatatgga
gcaatgcctgaaggtataaaggtggaagattctgtaaaacccgtatgtttgaaacatgag
gatttcacaaaagagaggccctcttctgatcaaagctcttcgttcaagaattctccgagt
cctgtgaactttgatggactttctggaaaatctcctgtatccggatttgattgttcagct
aacattgatatagagggtcaccaaatgcctgtaagagaatccagccccaatcaaagattt
ggcattccctctagctgtgagcattctgttgcaggatctgatagtgaagttcagctgagt
atggaagtttcctctggtcatcatgatgcttctggacaaggaaggagtggacagccaggc
ccgttactttgcgaatctccaggacagacaccacctcatgttttggaaggccctcattca
cagagtggtctgtcaagatatgatggtccaaaaatagcacagaggtttgatggccagcag
cctttgatatttgagggaaatacaaatcagcctatactagatggaccagcaagacctcat
ctacaagggagatttgataattctggaccaggaagatttgatggctcttccagatttgat
gggacacaaggttctggacgatttgatggtgcaccgatgcataaaggtccagatagattt
gatagctccaatcgatatgatacccccgcagtattgccaggtccacaaaggtttggtgaa
ccccaagggttaggaagatttaacgggccacatcttcagcagggagcaggtagatttgaa
ggtccagttggacagcaagctccagccaggtttgatggccaaagttctgtcatgtttgat
ggtccacagatgcaaactaataggtttgatgggcctttgaggtttgaaggtcctcacatg
cagcagggccctgggaggtatgaaggacgttttgctggcccacaggcccaacaaggacca
tctagatatgaagggccttccagccagcaggggcgaatgaggtttgatggtcctgtcaat
cagccaggtgctatacggtttgaacatggtcaaggacaaattggacctatgagatatgat
ggacagcagcaaggcatggcaagatttgactgtgcgcccagtcaacaaggcgctcccagg
tattgtggtccactgaatctgcaaagccagatgagaccactctgcccatccatgtttgat
aatgcccagggtcaaaaccagctgtcgaatcctgggccacagtcaaacttcaacatgccc
aacaacagatttgcagagcctctaaatgtttttggagctgcatcgcagtcttttcaagga
cagcagaatttgtcacaaggacataattttaatgttcaagcagcagctggaacgccgggt
ttctccaactcatttgtcagacctgtttcatcttactataatcctggtgctccagctgga
aacatgggcaccgccgttcctggtggaaacattcagcagccaatgaacatgctgcctggc
ctgaaaccccagatacctgccccatacagtcaaggacaaccctatggacagctacaacaa
actcctgtgcctttcggtcaaacaggttcacagtttccacctgaaagtcactttggtcag
gtagatgtcaatgatcttctttcgaagctcatttccactgggataataaagcctgctcaa
acggattccactacaactgggatgaatactccacctcaaagccagccggctgtggaagag
gaggaggaggaggagcaggatgacgatcagaatgttccggaccttactgcgtttgccata
gaagacatgaaacagagatatgacagtgttattaccaaactgtacactgggatacagtgt
tattcctgtgggatgcgattcactgcctctcagactgatgtctatgcggatcatttggac
tggcactacagacaaaaccgattagagaaggacatcagtaagaaggtcacacacaggagg
tggtactacagcttaatggactggattgaatttgaagaaatagctgatcttgaggaaaga
gcaaagagccagttctttgagaaggttcacgaggaggtcgaaaagaaaacccaagaagct
gcaaaagagaaagagttcctgagtgtcaaagctgctccagatgttgttggtgagacctgt
gaaatctgccaggagcagtttgagatgtactgggaggaggaagaggaggaatggcatttg
aaaaatgcgatccgtgtcgatgaaaagacttatcatccttcatgttatgaagactacaaa
aatacatcttcgtttgttgattgcactccatctcccaacaaagcccttatggagaaccct
ttagatgtgtttatcaaagaagaaaatgacccatcttcatgttccagtattaaacaagaa
cccgacatgcagagcagctgcactgatgcaaatgccgaagaggcatttcaggttaagtta
gaggcagagtcacaagccagtgcaattattttttaa
DBGET
integrated database retrieval system
