KEGG   Paramormyrops kingsleyae: 111839679
Entry
111839679         CDS       T05788                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pki  Paramormyrops kingsleyae
Pathway
pki03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111839679 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pki03041]
    111839679 (snrnp40)
Spliceosome [BR:pki03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    111839679 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    111839679 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_IFT122_1st WDR90_beta-prop_4th ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Cytochrom_D1 Beta-prop_IFT140_2nd Beta-prop_Nup120_160 WD40_like WDR54 MIOS_WD40
Other DBs
NCBI-GeneID: 111839679
NCBI-ProteinID: XP_023659558
Ensembl: ENSPKIG00000010709
UniProt: A0A3B3SGU2
LinkDB
Position
Unknown
AA seq 348 aa
MIEPKKRGAAEMAVVPAGIKKPRTELVAAAQSQQLATMGPPRSSSLQAPIMLLSGHEGEV
YCCKFHPNGSALASAGYDRLILLWSVYGDCDNYATLKGHSGAVMELHYNTDGSLLFSAST
DKTVGVWDSETGERIKRLKGHTSFVNSCYPARRGPQVVCTGSDDGTVKLWDIRKKASVHT
FQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYTMQGHGDSLTGLSLSSEGSY
LLSNSMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSADGSKIASGSADRFV
YVWDTTSRRILYKLPGHAGSVNEVAFHPTEPIVLSGSSDKRLYMGEIQ
NT seq 1047 nt   +upstreamnt  +downstreamnt
atgattgagccgaaaaagaggggtgcggcggagatggctgtggtacctgcgggcatcaaa
aaaccaaggacggaacttgtggcggcggcgcagtcgcagcagctagcgacgatgggtccc
cctcggagctccagtctccaggctcccatcatgctcttgtcaggccatgaaggagaagtg
tactgctgcaagttccaccccaacggatcagcgctggcgtccgctggttatgacagactc
atcttgttgtggagcgtctatggtgactgtgacaactacgccaccctgaagggccacagc
ggggccgtcatggagcttcactataacacagacggcagcctgctcttctctgcctccact
gataagacagtgggggtgtgggacagtgagacgggagagcgaatcaagcgcctgaagggt
catacttcctttgtgaactcgtgctatcctgcccgccgtggcccacaggtggtctgcaca
ggtagtgacgatgggactgtgaagctgtgggacatcaggaagaaggcgtctgtccacact
ttccaaaacacctatcaggtgctggccgtcaccttcaatgacaccagcgatcagatcatc
tccggcggcatcgataatgacattaaggtgtgggacctgcgacagaataagctgatctac
accatgcaaggacacggagactcgctgacgggcctgagcctcagctccgagggctcctac
cttctctccaactccatggacaacacagtgcgagtctgggacgttcgccccttcgccccc
aaagagagatgcgtgaagatcttccagggaaacgtccacaattttgaaaagaaccttctg
aggtgctcctggtcagcggacggaagcaagatagcatcaggctctgctgacaggtttgtg
tacgtgtgggataccacctccaggaggatcctgtacaagctgcctggtcatgctggctct
gtcaatgaggtcgccttccaccccacggaacccatcgtgctctccgggtcaagtgacaag
cggctctacatgggggagatccagtag

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