Paramormyrops kingsleyae: 111846996
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Entry
111846996 CDS
T05788
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pki
Paramormyrops kingsleyae
Brite
KEGG Orthology (KO) [BR:
pki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pki03016
]
111846996 (rtcb)
Enzymes [BR:
pki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
111846996 (rtcb)
Transfer RNA biogenesis [BR:
pki03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
111846996 (rtcb)
Prokaryotic type
tRNA splicing ligases
111846996 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
DUF7890
Motif
Other DBs
NCBI-GeneID:
111846996
NCBI-ProteinID:
XP_023673552
Ensembl:
ENSPKIG00000001881
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDQNCWRIRKGFVPNMKVEGVFYVNDSLEKLMFEELRNASRGGGFG
GFLPAMKQIGNVAALPGIVNKSIGLPDVHSGYGFAIGNMAAFDMSDPTAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQICVMIHSGSRGLGHQVATDALVAMEKAMKRDNIVVNDRQLACAHIGS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDQLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgaagctacaatgatgaattacagtacctggacaagatcgatcaaaattgctgg
cgcattcggaaggggtttgttccaaatatgaaggtggaaggggttttctacgtgaacgat
tctctcgagaagttaatgtttgaggagctgcgtaatgccagccgaggtggaggttttggt
ggattcttgcccgctatgaagcagattgggaacgtggcggctctcccgggaatagtgaac
aaatccattggtcttcctgatgtccactccggttacggctttgccataggaaacatggct
gcctttgacatgagcgatcccactgcagtcgtctcacccggtggtgtgggattcgacatc
aactgtggtgttcgcctgctgcgcaccaacttggacgagggtgatgtgcagccggtgaag
gagcagctggctcaggctctgtttgaccacattcctgtgggcgtaggctccaagggtgtc
atcccaatgggtgccaaggacctggaggaggcgctggagatgggagtggactggtccctg
cgggagggctatgcctgggcggaggacaaggagcactgtgaagagtatggccgcatgctg
caggctgaccccaataaggtctcctccaaagccaagaagagggggctcccccagctaggg
acgttgggtgcggggaaccactatgctgaaatacaagtggtggatgaaatctacaatgac
tacgctgccaagaagatgggcatcgaccataaggggcagatctgtgtgatgatccacagt
ggcagccgtggcctggggcaccaggtagctacagatgccctggttgctatggagaaggct
atgaagagggataatatcgtagtcaatgacagacagctggcgtgtgctcacatcgggtcc
ccagaaggtcaggactacctgaagggaatggcggccgctggcaattatgcctgggtcaac
cgctcctccatgaccttcctgaccagacaggccttctccaaggtgttcggcaccactcct
gatgacctggacatgcatgtcatctatgatgtgtcacacaacattgccaaggtggaggag
cacatggtggacggcaagcagaagaccctgctggtgcatcgcaagggctccacccgcgcc
ttccccccacaccatccactcatccccgtcgactaccagctgaccggacagcctgtgctg
atcggtggaaccatgggtacctgcagctacgtcctgacgggcaccgagcagggaatgaca
gaaacgtttggcaccacctgccacggcgccggtcgcgctctgtcccgggccaagtcacgt
cgcaacttggacttccaggatgtgctggaccagctggctgacaagggcatcgctattaga
gttgcctcacccaaactggtgatggaggaggcccctgaatcatacaagaatgtgaccgac
gtggtcaacacgtgccacgatgctggaatcagcaagaaggccatcaagctgaggcccatc
gcggtgattaaaggataa
DBGET
integrated database retrieval system
