Paramormyrops kingsleyae: 111860382
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Entry
111860382 CDS
T05788
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pki
Paramormyrops kingsleyae
Pathway
pki03013
Nucleocytoplasmic transport
pki03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pki00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111860382 (upf1)
03015 mRNA surveillance pathway
111860382 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pki03019
]
111860382 (upf1)
Enzymes [BR:
pki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111860382 (upf1)
5.6.2.5 RNA 5'-3' helicase
111860382 (upf1)
Messenger RNA biogenesis [BR:
pki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111860382 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
111860382 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
111860382
NCBI-ProteinID:
XP_023699833
Ensembl:
ENSPKIG00000006069
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDGQVNG
PDGILQNGGVDDPVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGARFMSTAMYDAREALIPGSVYDRSSTGRPSNMYFQTHDQIGMIGAGPSPVAAM
NIPIPFNLVMPPMPPPGYMGQGNGPSAGERAQVVGRGAPMLVSGGRPSAVGRPSAVGRPS
AVGRPSAVGRPSAVGRPSYGDVV
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcgcagaccctaaccttcctggacaccgaggaa
gcggagctacttggagccgacacccagggctcggagttcgagttcaccgacttcaccctg
ccgagccaaacgcagacccagggccagacgcagagccagctcgatggccaggtgaatggt
ccggacgggatcttgcagaatggtggggtggacgaccctgtggccaagaccagccagcta
ctggccgagttgaacttcgaggaggatgaggaggacacttactacaccaaagacctccca
gtgcatgcctgcagctattgtgggatccatgaccctgcatgtgtggtctactgtaacacc
agtaagaagtggttctgcaatggacgtgggaatacatccggcagccacatcgtgaaccat
ttggtccgagccaaatgcaaagaggtgacgctgcacaaggacggcccactgggggagacg
gtgctggagtgctacaactgtggctgccggaacgtcttcctgctgggcttcatcccggcc
aaggccgactcggtggtggtgcttctctgcaggcagccttgtgccagccagagcagccta
aaggacatcaactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctg
tcatggctggtgaagatcccctccgagcaggaacagctgcgtgcccggcagatcacagct
cagcagatcaacaagttggaggagctgtggaaggaaaaccccacagccaccttggaggac
ctggagaagcctggcgtggacgaggagccgcagcacgtgctgctgcgctatgaagatgcc
taccagtaccagaacatttttgggcctcttgtcaagctcgaggctgactatgacaaaaag
ctgaaagagtctcagactcaagacaacataacggtccgttgggacctcggtttgaataaa
aagcgcattgcttatttcacgcttcccaagacggattcagatatgcgtctgatgcaggga
gatgagatctgcctgcggtacaaaggagacttggcccccctctggaagggcattgggcat
gtcattaaagtcccagacaactacggagatgagattgccatcgagttgcggagcagcgtc
ggtgcccccgtggaagtaccacacaatttccaggtggattttgtgtggaagtccacatcc
tttgacagaatgcagagtgcattgaagaccttcgcggtggacgagacctctgtctcaggg
tatatctaccacaagctcttgggacacgaggtggaggatgtcatcattaagtgtcagctc
cccaagcgcttcactgcccagggcctgcctgacctcaaccactcgcaggtatatgctgtg
aagactgttctgcagcggcctctcagcctcatccagggtccccctggcaccgggaagaca
gtgacctccgccaccatcgtctaccacctggccagacagggcaatgggcccgtgttggtc
tgcgctcccagcaacatcgccgttgaccagctgaccgagaagatccaccagacaggcctg
aaagtggtgaggctctgcgctaagagccgggaggccatcgactcgccagtgtccttcctg
gccctgcataaccagatccgcaacatggacagcatgccggagcttcagaaactccagcag
ttgaaggacgagaccggggaactttcctctgcggacgagaagcggtatcgggcgctgaag
cgcacagccgagcgggagttactcatgaatgcggatgttatctgctgcacatgcgtggga
gccggcgacccgcgtctggccaagatgcagttccgctccatcctgattgacgagagcacc
caggctacggagcccgagtgcatggtgccagtggtgctgggggccaagcagctcatcctc
gtgggagaccactgtcagctggggccggtggtcatgtgtaagaaggcggccaaagctggg
ctctcccagtccctctttgagcgcctggtggtcttggggatccggcccatccgcctgcag
gtgcagtaccgcatgcacccagctctcagcgcattcccctccaacatcttctacgaaggt
tccctgcaaaacggggtcactgcggctgatcgtgtcaagaaagggtttgacttccagtgg
ccccagccggacaagcccatgtttttctacgtgacccaagggcaggaggaaatcgccagc
tcgggaacttcctacctgaacaggactgaagctgccaacgtggagaagatcaccaccaag
ctgctgaaggctggggctaaacccgaccagatcggcatcatcacgccctacgagggccag
cgctcctacctggtgcagtacatgcagttcagtggctctctgcacaccaagctgtaccag
gaagtggaaattgctagcgttgatgccttccaaggcagagagaaagacttcatcatcctg
tcctgcgtcagagccaatgagcaccagggaattgggtttctgaatgaccctcggcgcctg
aacgtggctctcaccagggccagatacggcgtgattatcgtggggaaccccaaagccctg
tccaagcagccgctgtggaaccacctgctgaactactacaaagagcaaaaggtgctggta
gagggtcctctcaataacctgcgtgagagcctcatgcagttcagtaagccccgcaagctg
gtcaacaccatcaacccgggtgcccgtttcatgagcaccgccatgtatgacgccagagaa
gctctcatccctggctctgtctacgaccgcagcagcaccggccgtccgtcgaacatgtac
ttccaaacccatgaccagatcggcatgatcggagcaggccccagccctgtggctgccatg
aacatccccattccgttcaacctggtcatgcctccaatgcccccaccagggtacatgggc
caagggaatgggccttccgcaggtgagagagcacaggtcgtaggtaggggggcacctatg
ctggtatcgggggggaggccttccgcggtggggaggccttccgcggtggggaggccttcc
gcggtggggaggccttccgcggtggggaggccttccgcggtggggaggccttcctatgga
gatgtggtgtga
DBGET
integrated database retrieval system
