Pseudomonas kielensis: Q1W70_03380
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Entry
Q1W70_03380 CDS
T09328
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pkj
Pseudomonas kielensis
Brite
KEGG Orthology (KO) [BR:
pkj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkj03019
]
Q1W70_03380 (hrpA)
Enzymes [BR:
pkj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Q1W70_03380 (hrpA)
Messenger RNA biogenesis [BR:
pkj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Q1W70_03380 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
AAA_25
NACHT
T2SSE
SLFN-g3_helicase
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
WKL53640
LinkDB
All DBs
Position
complement(664628..668539)
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPSIDKLLNNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVTRLQASCDQVLARR
ASLPVIRYDDSLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAHERSERRSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICIRLYS
EEDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAARLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDVDSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLSLNKEPADYPRLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAY
EQITLFGLIIVGRRPVHYGPIDPLVSRELFIREALVRGEIQSKAKCLTANAQLLEQLDEL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRVNSQKDPQLLIMREEDVLARE
ANEITAAHYPDTLRLGDLTLPLSYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGVI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRITFGDGSLPQALGRELLRMTGARVSDEA
WAEAAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVE
AKVFAAVAQQTQQKIAGLSMTVYPALVEEAGTVKEGRFSTPAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGLTELGLMYRELGRIDALVEDILLASLDSCILDGEPSLPRDGAGLAAL
AERKRGGWTEHAERLAKLTLEILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPMVWLKELPRYLKAVEQRFEKLGAQVQKDRVWSGELSALWAQYQARASKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLNKQWTQVEP
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgaatcgccttccatcgacaaactgttgaacaacctcgatcacgccatgctc
gccgaccgccaccggctgcggcgccaattgctcgagctgcgcaagaaacccgacgaggcc
aagttggcccagtgggtcacgcgcctgcaagcgtcctgcgaccaggtgctggcgcggcgt
gccagcctgccggtgattcgttacgacgacagtttgccgattgccgccaagcgcgacgaa
atcaaggaagcgctgctaaagcaccaggtgttgatcatcgccggggaaaccggctcgggt
aaaaccacccagttgccgaagatctgcctggaaatcggccgcggccagcacgggctgatc
gggcacacccagccacggcggattgccgcgcgcagcgtcgccagccgggtcgccgaggaa
ctggccacgccgctgggggcgctggtcggctatcaggtgcggttcgaggatcagagcgac
tccaataccctgatcaagctgatgaccgacggcatcctgctggcggaaacccagaacgac
cgctacctcgagcgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctgaac
atcgatttcctgctcggttacctgaaaaccctgctgccgcgccgtcccgacctcaaagtc
atcatcacctcggcgaccatcgacctggagcgcttctccaagcacttcgacgacgcgccg
attgtcgaagtctcggggcgtaccttcccggtggacacctggtaccggccgctgacgctt
gagcaggacgaggaaggcaaccgggtcgaagacgacctgacggtggaccaggcgatcctc
gccaccctcgatgaaatcgccgcccatgaacgcagcgagcgccgcagcccaggtgacgtg
ctggtgttcctgccgggcgagcgggagattcgcgacgccgccgacatgttgcgcaaggcc
cagctcaagcacaccgaaatcctgccgctgtatgctcgcctgtcaccggccgagcagcag
cggatcttccagtcgcacccggggcggcgcgtggtcctggcgaccaacgtcgcggaaacc
tcgttgacggtgccggggattcgctacgtgattgacagcggcaccgcgcgcatcagtcgc
tacagctaccgggccaaggtccagcgcctgccgatcgaggccatctcccaggccagcgcc
aaccagcgtaaagggcgctgcggccgggtcgagccgggcatctgcattcgtctgtacagt
gaagaagactttatcggccggccggaatttaccgacccggaaatcctgcgcaccaacctg
gcggcggtgatcctgcagatgctccatctgcgcctgggcgagatcaccgacttcccgttt
atcgaaccgccggatggcaaggccatcagcgatggcttcaacctgctgcaggaactctcg
gcagtagaccgcaacagtcagctgacgccgctgggccggcaactggcgcgcctgccggta
gacccgcgcatgggccgcatgctgctggaggcggcccggttgggcagcctccaggaagtg
ttgatcgtcgccagtgccatgtcgatccaggacccgcgcgagcggccgccggagcgtcag
caggccgccgatcaggcccacgcgcaatggaaggacgtcgactcggacttcgccgggctg
gtcaatctgtggcgcggctttgaagagcagcgccaggcgctgactgccagccccttgcgc
aactggtgtcgcaagaatttcctgaactacctgcgcctgcgcgaatggcgtgactctcat
cgccagttgagcctgatctgccgcgacatgcagctgtcgctcaacaaggaaccggcggat
taccccaggttgcacaaagcggtgttgtccggcttgctcagccagattggccagaaaacc
gaggacggcgactacctcggtgcccgccagcggcggttctggattcacccctcatcgggc
ctgggcaagaagcgcccgcaatggctgatgaccgccgagctggtggagaccaccaagctc
tacgcgcgcatggtggccaagatcgatgccgactggatcgaaccgctggccgggcacctg
atcaagaagaaccacttcgaaccccattgggagaagaagcgtgggcaggtggtggcgtac
gagcagatcaccttgttcgggctgattatcgtcggtcgccgtccggtgcattacgggccg
atcgatccactggtatcgcgcgagctgttcatccgcgaagccctggtgcgtggcgagatc
cagtccaaggccaagtgcctcaccgctaacgcgcaactgctcgaacagctcgatgagctg
gaagccaaggcacgccggcgcgacatcctggcggacgaagaaaccctgttcgccttctac
gacgcgcgcttgccggcagagattcaccagaccgcgaccttcgacagctggtaccgggtc
aacagccagaaagacccgcagctgttgatcatgcgcgaggaagatgtgctggcgcgcgag
gccaacgaaatcaccgcggcgcattacccggacaccctgcgcctgggcgacctgaccctg
ccgttgagttatcacttcgaacccaaccatccgcgtgatggcgtgaccctgcgcgtaccg
gccccgctgttgccgatgttgcccccggagcgcctggagtggctggtgccgggggtgatc
gaggccaagtgcattgccctggtgcgcaacctgcccaaggccttgcgcaagaactttgta
ccggtgccggacttcgtcaaggcagccttgcaacgcatcacctttggcgacggctcgttg
ccccaggccctgggtcgggagttgttgcgcatgaccggtgcccgggtcagcgacgaggcc
tgggccgaagccgcgcagcaggtggaaagccacttgcggatgaacctggaaattgtcgac
ggccagggcaagttcctcggcgaaggccgcgacctggccgaactgacggcccggtttgcc
gaagccagccaggcggccctggcggtgccacagactgcgaaaagccaacagccggtggag
gccaaggttttcgccgccgtggcccagcagacccaacagaagatcgccgggctgtcgatg
acggtctacccggccttggtggaagaggcgggcacggtcaaggaggggcgtttctcgacc
ccggccgaggccgagttccagcaccgccgtgccttgcagcgcttgctgatgcagcaactg
gcggagccggcgaagttcctgaggggcaaattgccggggctcaccgaactgggcttgatg
taccgcgaactggggcggatcgacgcgctggtggaagacatcctgctggcgagcctggac
agctgcattctcgacggtgaaccgagcctgccccgcgacggtgccgggctggcggcgctg
gccgaacgcaagcgcggcggctggaccgagcatgccgaacgcctggcgaagctgacgctg
gagattctcaagctctggcacggcctgcaaaaacgcttcaagggcaagatcgacctggca
caagcggtggccttgaatgacatcaagcaacagttgagtcacctggtgtacccagggttt
gtccgcgaaaccccgatggtgtggctcaaggagctgccgcgctacctcaaggccgtcgaa
cagcgcttcgagaaactcggcgcacaggttcagaaggaccgggtctggagcggcgaattg
tcggcgctctgggcgcaataccaggcccgcgccagcaaacatgcccaggaaggcaagcgc
gatccgcaactggagctgtaccgctggtggctggaagagtaccgggtgtcgttgtttgcc
cagcaactggggaccaaggtgccgatctccgacaagcgcctgaacaagcagtggacccag
gtcgaaccgtag
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integrated database retrieval system
