Pseudomonas kielensis: Q1W70_05940
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Entry
Q1W70_05940 CDS
T09328
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pkj
Pseudomonas kielensis
Pathway
pkj02020
Two-component system
pkj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pkj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Q1W70_05940
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Q1W70_05940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkj03021
]
Q1W70_05940
Transcription machinery [BR:
pkj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Q1W70_05940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_21
TrmO_C
Motif
Other DBs
NCBI-ProteinID:
WKL54117
LinkDB
All DBs
Position
1199022..1200515
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AA seq
497 aa
AA seq
DB search
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNAD
PMADNIEHKPNTDVQEPSYQETAPTVDNLEEGEWNERIPNELPVDTAWEDVYQTSASSLP
SNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIGVTLIDCINNQGYLDETLEEI
LEAFDPELDIELDEIEAVLHRIQQFEPAGIGARNLGECLLLQLRQLPAKTPWLAEAKRLV
SDYIDLLGSRDYSQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESSEAEYVVPDVIVRK
DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcttgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggccatccgcctgctccaattgtcgaccctggacctgcaacaggaaatccaggaagcc
ttggagtcaaatccaatgctcgaacgccaggaagaaggcgacgacttcgataacgccgac
cctatggcggacaacatcgagcacaaacccaacaccgacgtccaggaaccctcctaccag
gaaaccgcccccacggtggataacctcgaggaaggtgaatggaacgaacgcattcccaac
gaactgccggtcgacaccgcctgggaagacgtctaccagaccagcgccagcagcctgccc
agcaacgatgacgacgagtgggatttcaccacccgcacctccgccggtgaaagcctgcag
agccacctgctctggcaattgaacctggccccgatgtccgacaccgatcgcctgatcggc
gtgaccctgatcgactgcatcaacaatcagggctacctggacgaaaccctcgaggaaatt
ctcgaggcattcgacccggaactggacatcgagctggacgaaatcgaagccgtcctgcat
cgcatccagcaattcgagcccgccggcatcggcgcccgcaacctgggtgagtgcctgttg
ctgcaattgcgccagctgcccgccaagaccccttggctggcagaggccaagcgcctggtc
agtgattacatcgatctgctcggcagccgcgactacagccagttgatgcggcgcatgaag
ctcaaggaagacgaactgcgccaggtcatcgaactggtccagagcctcaacccgcggccc
ggctcgcagatcgagtccagcgaagccgaatacgtggtgcccgatgtgatcgtgcgcaag
gacaacgaacgctggctggtggaactgaaccaggagtcggtaccgcgcttgcgggtcaac
cctcagtacgccggtttcgtgcgtcgcgccgacaccagcgccgacaacaccttcatgcgc
aatcagttgcaagaggcacgctggttcatcaagagcctgcaaagccgcaacgaaaccctg
atgaaagtggccacccagatcgtcgagcaccagcgcggctttctcgaatatggcgacgag
gcgatgaagccgctggtcctgcatgacatcgccgaagcggtgggcatgcacgagtcgacg
atttcccgggtcaccacgcaaaaattcatgcataccccgcgcggtatctatgagctgaaa
tactttttctcaagccacgtcagcacctccgaaggcggcgaatgctcgtccacggcgatc
cgcgcgatcatcaaaaaactggttgccgcggaaaatcagaaaaagccgttgagtgacagc
aagatcgctggtttactggaggcacaaggtattcaggtagcccgtcgtaccgtcgccaag
taccgtgaatccctcgggatcgcgccttcgagcgaacgcaagcgattgatgtaa
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