Pseudomonas kielensis: Q1W70_13120
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Entry
Q1W70_13120 CDS
T09328
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pkj
Pseudomonas kielensis
Pathway
pkj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pkj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Q1W70_13120 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkj03021
]
Q1W70_13120 (rpoC)
03400 DNA repair and recombination proteins [BR:
pkj03400
]
Q1W70_13120 (rpoC)
Enzymes [BR:
pkj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q1W70_13120 (rpoC)
Transcription machinery [BR:
pkj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q1W70_13120 (rpoC)
DNA repair and recombination proteins [BR:
pkj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q1W70_13120 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
Motif
Other DBs
NCBI-ProteinID:
WKL55444
LinkDB
All DBs
Position
2835250..2839449
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVTNTRIVDTTVGRALLFQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGVEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGCLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGTDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSTFIKGDQMELTHVLVENERLAGDDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaaccagaacgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggtgtgatctgcgagaagtgcggcgttgaagttgcactggcaaaagttcgtcgtgag
cgcatggcgcacatcgaactggcctcgccagttgcccacatctggttcctgaaatcgctg
ccgtcgcgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctacgtcgttatcgatccaggcatgaccacccttgaaaaaggtcagctgctc
aacgacgagcagtacttcgaagcgctggaagagttcggcgatgactttgatgcccgcatg
ggtgccgaagctgtccgcgaactgctgcacgctatcgacctggagcacgagattggccgc
ctgcgtgaagaaattccgcaaaccaactcggaaaccaaaatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaaccttccagaatggatggtgctgacc
gttctgccggttctgccgccagatctgcgtccactggtcccgctggatggcggtcgtttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtttgaag
cgcctgctggatctgtctgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagctgtcgatgcgctgctcgacaacggtcgtcgtggccgcgctatcaccggttccaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactctggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggcgctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctcgctaccaccatcaaagctgccaagaagatg
gtcgagcgcgagctgccagaggtttgggacgttctcgctgaagtgatccgtgaacacccg
gttctcctcaaccgtgcaccgacccttcaccgtctgggtatccaagcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgacgcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgcggatctgcaggaagttgaccgtgtgttccgtgccggc
gaagccgcactgcacgcgaaagtcaaagtgcggatcaacgaaaccgtcaatgaccgtgat
ggcggcagcgtgaccaacacccgtatcgtcgacaccactgtcggccgtgcgctgttgttc
caggttgtgccaaaaggtctgtcgtacgacgtcgtcaacctgccaatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagttgatgtacacaggttttgcctattcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagctcgcatcatcggtgctgccaccgacgaa
gtgaaagaaatcgaaagtcagtacgcctccggcctggtaacccagggcgagaagtacaac
aaagtgatcgacctttggtccaaggcgaacgacgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgtcatggcgtcgaagtcgagcaagagtccttcaac
tcgatgtacatgatggccgactcgggcgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggttccatcatcgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtactccagtacttcatctccactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaaccgctaactccggttacctgactcgtcgtctg
gtagacgtggcacaagatctggttgtaaccgagatcgattgcggcaccgagcacggcctg
ctgatgactccgcacattgaaggcggtgacgttgtagagccgctgggtgagcgcgtattg
ggtcgtgttatcgcccgtgacgtgttcaagccaggtaccgaggacgtcatcgttcctgct
ggcaccctggtagatgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcagttgcgaaacccgctacggcatctgcgccaagtgctacggc
cgtgatctggctcgtggtcaccaggtgaacatcggtgaagcggttggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcagccgacagcgttcaggtgaagaatggcggtaccgtccgtctg
cataacctgaagcacgttgagcgagtggatggttgcctggttgctgtgtcccgttccggt
gagctggcgattgctgatgactacggtcgtgagcgtgagcgctacaagctgccgtacggt
gctgtgatttcggttaaagagggtgacaaggtcgacgctggcgcaatcgtggccaagtgg
gatccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgccaaagatcgtccagctgctggtaaagacatccgtcctgccgtgaagatg
gtcgacgacaacggcaaggatctgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccagccaacgccttggtcggtgtagcggatggtgcgaaaatcgcgatcggtgatgtt
atcgcgcgtattccgcaagagacttcgaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagctcgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaaaggcaagcgccgtctggttatcactccgaac
gacggtaccgatccgtacgaagagctgattcctaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacattgttaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgataagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgaaatcgctgaatctggcgattccactttcatcaagggcgaccagatg
gaattgactcacgtcctggtagagaacgagcgtttggctggcgacgacaagttcgtctcc
aagttcactcgcgttctgctgggtatcaccaaggcgtcgttgtccaccgaatcgttcatc
tcggcggcctctttccaagagaccacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggtcgtgggtcgtctgatcccggcgggt
accggtctggcttatcacagcgagcgtaagcgtcgccgtgatgctgacaaaccgttgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaactcgagcggtaactga
DBGET
integrated database retrieval system
