Pseudomonas kielensis: Q1W70_16365
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Entry
Q1W70_16365 CDS
T09328
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pkj
Pseudomonas kielensis
Pathway
pkj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pkj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Q1W70_16365 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkj03400
]
Q1W70_16365 (sbcB)
Enzymes [BR:
pkj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
Q1W70_16365 (sbcB)
DNA repair and recombination proteins [BR:
pkj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Q1W70_16365 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Q1W70_16365 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Q1W70_16365 (sbcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WKL51067
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All DBs
Position
3504351..3505778
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AA seq
475 aa
AA seq
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MTSIFWYDYETTGISPRCDRPLQMAGIRTDLDLNEIEAPVNLYCRPSDDILPHPAACVIT
GITPTRLAEKGLCEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE
WQGGNSRWDLIDVVRAAYALRPDGIVWPQEEGRVTLKLERLTAANGLDHGQAHEALSDVR
ATIALARLIRDRQPKLYDWLFKLRSKQKVMDQIRLLQPMVHISGRFSADRSYVGVVLPLA
WHPRNRNALIVCDLHLDPEGLLADDVETLRQRLYSRRADLPEGTLPVPLKLIHINRCPVV
APLSVLRAEDQQRLQLDMALYQARALRLSDAQELWRDKVQAIYAQEDFTPSDDPEQQLYD
GFIGDRDRRLCEQVRAADPQQLAQEQWPFDDERLPELLFRYRARNFPETLSEQEQERWKL
FCQQRLSDARWGAPNTVQAFDEACEQWSQNATGGTLEVLQEWREYVALLRKRLNI
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgacttccattttctggtacgactacgaaaccaccggtatcagcccgcgttgcgaccga
ccgctgcaaatggccggcattcgcactgacctcgacctcaacgagatcgaggccccggtc
aatctctactgtcgacccagtgacgacatcctgccgcatccggccgcctgcgtgatcacc
gggatcaccccgacgcgcctggccgaaaagggcctgtgcgaagcggatttcatgacccgg
gtgcatgcgcaactggccgcgcccgggacctgcggcgccggttacaacaccttgcgtttc
gacgatgaaatgacgcgctacagcctgtatcgcaattttttcgacccctatgcccgtgag
tggcagggcggcaacagccgctgggacctgatcgatgtggtgcgtgcagcctatgcgtta
cgcccggacggtatcgtctggccgcaggaggaggggcgtgtcacgctcaagcttgaacgc
ctgacggccgccaacggcctggaccatggccaggcccacgaagccttgtccgatgtgcgc
gccaccattgccctggcgcggctgattcgcgatcggcagcccaagctttatgactggctg
ttcaagttgcgcagcaaacagaaagtcatggaccagattcgcctgttgcaaccgatggtg
catatttccgggcgcttttctgccgaccgcagttatgtgggagtcgtcctgccgctggcc
tggcacccgcgcaatcgtaatgcactgattgtctgcgacctgcacctggatcccgagggc
ttgctggcagatgacgtcgaaaccctgcgtcagcgcctgtacagccgccgtgcggatttg
cccgaagggacgctgccggtgccgctcaaactgattcatatcaaccgctgtccggtagtg
gcgccgttatcggtattgcgcgctgaggatcagcaacgactgcaattggacatggcgctg
tatcaggcgcgggcgctgcggctaagtgacgcacaggaactttggcgagataaagtccag
gccatttatgcccaggaggacttcacccccagcgatgatccggaacaacagttgtacgac
ggtttcattggcgaccgcgaccgacgtttatgcgagcaagtgagagcggccgatccacag
caattagcgcaagaacaatggccgttcgatgatgaacgtttaccggaattattatttcga
tatcgcgcacgtaacttccctgaaaccttgagtgaacaggagcaagagcgctggaaatta
ttctgtcagcagcgtttgagcgatgctcggtggggggcgcccaataccgtgcaggcattt
gatgaagcctgcgagcaatggtcgcagaatgccacgggcggaacgcttgaggttctgcag
gaatggcgcgagtacgtggcgctattgcgcaagcgtttgaatatttga
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