Pseudomonas kurunegalensis: QQ992_24780
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Entry
QQ992_24780 CDS
T09327
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pkk
Pseudomonas kurunegalensis
Pathway
pkk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QQ992_24780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkk03019
]
QQ992_24780
Enzymes [BR:
pkk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QQ992_24780
Messenger RNA biogenesis [BR:
pkk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QQ992_24780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WJD62110
LinkDB
All DBs
Position
complement(5434893..5436224)
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AA seq
443 aa
AA seq
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MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL
QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR
LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR
QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKVDLFCHLLR
KQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVA
TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIE
VLTRQTLPRHEEPDFIPDHRVPMTDATGQVIKKPKKPKKPKENSAKRGLGRWMDSTEAGN
AEPAVKAVRKVPSFNGGPRKRKP
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgccaaactcggcctgatcgaaccgctgctgcgcacgctgcagcagctggac
tacaccaccccgaccccggtgcaggccaaggccatccctgccgtgctggctggccgcgac
ctgatggccgccgcccagaccggcaccggcaagactgcgggctttgccttgcctgtgctg
cagcgcctggcgctggagggtgagaaagtggccagcaactcgatccgtgcgctggtgctg
gtgcccacccgcgagctggccgagcaggtgcacaacaacgtgcgcgagtacgccgagaac
ctgccgctgagcacttacgcggtgtacggcggggtcagcatcaacccgcagatgatgcgc
ctgcgccgtggcgtggacctgctggtggccaccccgggccgcttgctcgacctgttccgg
caaaacgcggtgaagttcaaccaggtgcaaacgctggtgctggacgaagccgaccgcatg
ctcgacctgggctttgccgaagaactgcaatcggtgtacgccgcgctgccacgcaagcgc
cagacgttgctgttttccgccaccttctccgaccagatccgcatgctggcggggctggcg
ctgaatgacccgctcagcatcgaagtgagcccgcgcaatgccacggccgccagcgtcaag
cagtggctggtgcctgtggataaaaaacgcaaggtcgacctgttctgccacttgctgcgc
aaacagcgctggaagcaggtgctggtatttgccaagacccgcaatggcgttgaccagctg
gtagagcgcttgctggccgagggtgtgaatgccgatggtatccacggtgaccggccgcaa
gccacccgccagcgcgcgctggacagcttcaaggcccgcgaggtacaggtgctggtggcg
accgacgtggcggcccgtggcctggacatcgatgatcttccgctggtggtcaacctcgat
ttgccgatcgtggccgaggactacgtgcaccgaatcggccgtaccgggcgagccggcaac
aaaggcgaggcgatatcgctggtgtgcgcggatgaagtgcaactgctggcggccatcgaa
gtgctgactcgccagacactgccgcgccatgaagaaccggacttcatccccgatcaccgg
gtgccgatgaccgacgccacgggccaggtgatcaagaagccgaagaagcccaagaagccg
aaagagaacagcgccaagcgtgggctgggacggtggatggacagcactgaagcgggtaat
gcggagccggcggtgaaggcagtgcgcaaggtgccaagcttcaacggtgggccgcgtaag
cgtaagccttga
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