Pseudomonas kurunegalensis: QQ992_25350
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Entry
QQ992_25350 CDS
T09327
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pkk
Pseudomonas kurunegalensis
Pathway
pkk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QQ992_25350 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkk03019
]
QQ992_25350 (rnr)
03016 Transfer RNA biogenesis [BR:
pkk03016
]
QQ992_25350 (rnr)
Enzymes [BR:
pkk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QQ992_25350 (rnr)
Messenger RNA biogenesis [BR:
pkk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QQ992_25350 (rnr)
Transfer RNA biogenesis [BR:
pkk03016
]
Prokaryotic type
tRNA degradation factors
QQ992_25350 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
CSD
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
WJD62222
LinkDB
All DBs
Position
complement(5551010..5553595)
Genome browser
AA seq
861 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREELAAEFGLYEEDQIEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSEDLFLSPSQMR
LVFDGDRGLARVSGVDRRGRREGVLVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEV
LVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHV
WPKDVIKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSG
GWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRL
AMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHARTREGKALREEYKEVVPD
LKNLYNLYKVLVDARHTRGAIDFETQETRIIFGDQRKIAEIRPTVRNDAHKLIEECMLAA
NVATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASI
AGRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSII
RSKVDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEFM
KDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLSGERTGRS
FRLGDTIEVKVMRVDLDERKIDFEVAEKTLAAPIGRKQRGAAPAADKVEQQPVTEAKATP
KPRSRKSETAEAYFPKDAVQRNAEVRKSREMKKALMSEARSGGHASSKSDKGGKPSGSGK
PTKHRKGPPKSGAPRKSKSKS
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgctcgcgaagcggaaaaatacgacaac
cctatccccagccgtgagctgatcctgcagcgcctcgccgaccgtggcgaaccggctgcg
cgtgaggagctggcggccgagttcggtctgtacgaagaagaccagatcgaagccctgcgc
cgccgcctgcgtgccatggagcgtgacggccagcttatctatacccggcgcggcacttat
gccccggtagacaagctggacctgatctgtggtcgcgtctccggccaccgcgatggcttc
ggcttccttattcccgatgacggcagcgaagacctgttcctcagcccgtcgcagatgcgc
ctggtgttcgacggtgaccgcggcctggcccgtgtctctggcgtcgaccgccgtggccgc
cgcgaaggtgtgctggtcgaggtcatctcccgtgcccacgaaagcgtggtcggccgttac
ttcgaagaaggtggcattggctacgtaaccccggacaacccgaagatccagcaggaagtg
ctggtgaccgccgggcgtaacggcggcgcgaagatcggccagttcgtcgagatcaagatc
acccactggccaaccccgcgcttccagccgcaaggcgacgtggtcgaggtcatcggcaac
tacatggcgccgggcatggaaatcgacgttgccttgcgcagctacgatatcccgcacgtc
tggcccaaggatgtgatcaaggaagcgcgcaagttccgctccgaagtcgaagagaaggac
aaagagaagcgcgtcgatctgcgccatctgccgttcgtcaccatcgacggcgaagatgcg
cgcgacttcgacgatgctgtctattgcgaaccgctgggcaagctgcgcctgttctccggt
ggctggcgcctgtacgtggccattgccgatgtgtccagctacgtacgcctgggctcggcc
ctggacgtcgaagcccagcagcgcggcaactcggtgtacttccccgagcgtgtagtgcca
atgctgcctgaggagttgtccaacggcctgtgctcgctgaacccgcatgtcgatcgcctg
gccatggtctgcgaaatgaccatgaacaaagccggccagatggtcgactaccagttctac
gaaggcgttatccattcccacgcccgcctgacctacaacaaggtcagcagcatgctcgag
cacgcccgcacccgtgagggcaaggcgctgcgcgaggaatacaaggaagtcgtgccggac
ctgaagaacctgtacaacctgtacaaggtgctggtggatgcccgtcacacccggggcgcc
atcgacttcgaaacccaggaaacccgcatcatcttcggcgaccagcgcaagatcgcggaa
atccgcccgaccgtgcgcaacgatgcccacaagctgatcgaggaatgcatgttggcggcc
aacgtggccaccgccgagttcctgcaaaagcacggcgtgccagccctgtaccgcgtgcac
gacggcccgccgccggagcgcctggaaaaactgcgcgccttcctgggtgagctgggcctg
agcctgcacaaaggcaaggacccttcaccgaaggattaccaggccctgctggcgagcatc
gccgggcgcccggacttccacctgatccagaccgtgatgctgcgctcgctgagccaggcg
gtgtacagcaccgagaacaatggccacttcggcctgaactacgaggcgtatacccacttc
acctcgccgatccgccgctacccggacctgctggtgcaccgcgccatccgcagcatcatc
cgttccaaggtcgataccccgcacgtcaagcgtgccggcgccatgagcatccccaaggcg
cgtatctacccgtacgacgagaacaccctggagcaactcggcgagcagtgctcgatgacc
gagcgccgggccgacgaagccacccgtgacgtggtgaactggctcaagtgcgagttcatg
aaggatcgcgtgggcgagaccttcccgggtgtgatcaccgccgtgaccggtttcggcctg
ttcgtcgaactgaccgacatctatgtagaaggcctggtgcacgtcagtgcgctgccgggc
gactactaccacttcgacccggtgcaccaccgcctgtcgggcgagcgcaccggccgcagc
ttccgcctgggcgacaccatcgaagtgaaggtcatgcgtgttgacctggacgagcgcaag
atcgacttcgaagtggcggaaaaaaccctcgctgcaccgatcggccgcaagcagcgcggc
gccgcgccagcagccgacaaggttgaacagcagccagtaaccgaagcgaaagccacgcct
aaaccgcgtagccgcaagagcgaaaccgccgaggcgtacttcccgaaagacgccgtgcag
cgtaacgccgaagtgcgcaagagccgcgaaatgaaaaaggcgctgatgagcgaggcgcgc
agtggcggccatgccagcagcaagtcggacaaaggtggcaagccctccggttccggcaag
ccgaccaagcaccgtaaaggcccgccgaagtccggtgcgccacgcaagagcaagagcaag
tcatga
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