Pseudomonas kurunegalensis: QQ992_25840
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Entry
QQ992_25840 CDS
T09327
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pkk
Pseudomonas kurunegalensis
Pathway
pkk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QQ992_25840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkk03019
]
QQ992_25840
Enzymes [BR:
pkk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QQ992_25840
Messenger RNA biogenesis [BR:
pkk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QQ992_25840
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WJD62315
LinkDB
All DBs
Position
5666320..5668224
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AA seq
634 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN
PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKL
LKSIERVTKQRIPDGDLMGFDASQVEAEKPEVRERPQNNGRGGRNQQARGEGGKDANGGR
KDKGKDKGKAKQQSAEKPADKENSGDKQQQPRKPRDKKPRQQQQQQASNSSVPKAPADRD
PEEFLDDDIDNFGNRADYVSPYQGKNQGRNRRPGGGAGQGQGQGNGQRSNAGGQGQARSG
GQQRSGSGGGEKRPPRANNGGGARRDGGGAGRGRPARDDAARQEPAVRNPRQPEKQPVII
RKESKLDRYPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctcttgtccgcgctatcgaggctgcgggc
tatacccagccgacccccgtgcaacagcgggccattcccgccgtgttgcaaggccgtgac
ctgatggttgccgcacagacaggtactggtaaaaccggcggtttcgccctgccgattctc
gagcgcctgttcccggccggccaccccgacaagtcgcaacgtcacggcccgcgccagccg
cgcgtactggtcctgaccccgacccgcgaactggcagcccaggtgcacgacagcttcaag
gtgtatgcccgcgacctgccactggtcagcgcctgcatcttcggcggcgttggcatgaac
ccgcagatccaggccatcgccaaaggcgttgacgtgctggttgcctgcccgggccgcctg
ctcgacctggccggccaaggcaaggttgacctggcccacgtggaaatcctggtactcgac
gaagccgaccgcatgctcgacatgggcttcatccacgacgtcaagaaggtactggcccgc
ctgccggccaagcgccagaacctgctgttctcggccaccttctccaaggacatcaccgac
ctcgccgacaagcttctgcataacccggagcgtatcgaggtcaccccgccgaacaccacg
gtcgaacgtatcgaacaacgcgtgtaccgcctgcctgccagccacaagcgcgcgctgctg
gcacacctgattaccctgggtgcctgggaacaggtgctggtgttcacccgtaccaagcac
ggcgccaaccgcctggccgagtacctggaaaagcacggcctgaccgccgctgcgatccac
ggcaacaagagccagaacgcccgcaccaaggcgctggccgacttcaaggccaacagcgtg
cgcgtgctggttgccaccgacatcgccgcccgcggcctggacatcgaccaactgcctcat
gtggtcaacttcgagctgcccaatgtcgaggaagattacgttcaccgcattggccgtacc
ggccgtgccggtcgttcgggcgaggcgatttccatggtcgcgccggatgaagagaagctg
ctcaagagcatcgagcgggtgaccaagcagcgcatcccggatggcgacctgatgggcttc
gatgccagccaggtagaagccgaaaagcccgaagtgcgcgagcgcccgcaaaacaacggc
cgcggtggccgtaaccagcaggcccgtggcgaaggcggcaaagacgccaacggcggccgc
aaggacaaaggcaaggataaaggcaaggccaagcagcagtctgcggagaagccggccgac
aaggaaaatagcggcgacaagcaacaacagccgcgcaagccgcgtgacaagaagccgcgc
cagcagcaacagcagcaggccagcaacagcagcgtgccgaaagcgccagccgaccgtgac
ccggaagagttcctggacgacgatatcgacaacttcggtaaccgcgctgactacgtcagc
ccctaccaaggcaagaaccagggccgcaaccgccgcccaggtggtggtgcgggccaaggt
cagggccaaggcaatggccagcgcagcaatgccggtggccagggccaggcccgcagtggt
ggccagcagcgcagcggtagcggcggcggcgaaaaacgcccgcctcgcgccaacaacggt
ggcggtgcccgtcgcgatggcggcggcgcaggccgtggccgccctgcccgtgacgatgcc
gcccggcaagagccggccgtgcgcaacccgcgccagccggaaaaacagccggtgatcatc
cgcaaggaatccaagctcgaccgttacccaacgcctgagcagctggatgatttgccaagc
cgcccgcgcggtgagcgcccagccttgttgacccgaaaaggctaa
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