Pipistrellus kuhlii (Kuhl's pipistrelle): 118702796
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Entry
118702796 CDS
T07682
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pkl
Pipistrellus kuhlii (Kuhl's pipistrelle)
Pathway
pkl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118702796 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkl03019
]
118702796 (MTREX)
03041 Spliceosome [BR:
pkl03041
]
118702796 (MTREX)
03009 Ribosome biogenesis [BR:
pkl03009
]
118702796 (MTREX)
03016 Transfer RNA biogenesis [BR:
pkl03016
]
118702796 (MTREX)
Enzymes [BR:
pkl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118702796 (MTREX)
Messenger RNA biogenesis [BR:
pkl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
118702796 (MTREX)
Spliceosome [BR:
pkl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
118702796 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
118702796 (MTREX)
Ribosome biogenesis [BR:
pkl03009
]
Eukaryotic type
Pre-60S particles
Helicases
118702796 (MTREX)
Transfer RNA biogenesis [BR:
pkl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
118702796 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
DUF2486
Motif
Other DBs
NCBI-GeneID:
118702796
NCBI-ProteinID:
XP_036265067
LinkDB
All DBs
Position
Unknown
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDSAAAPGARKDKEKGKWKGPPGSSEKAGKRSDGNLQSESTDVGKA
KRHVDFEGADEPIFGKKPRVEESVTEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDY
VPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLREAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVRNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSRESLKNSATEAAKPAKPEE
KGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQATALLSCFVFQENSSEMPRLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVHTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggatgagctcttcagcgtgttcgaggacgactccgccgctgcg
cctggagccaggaaagacaaggagaaggggaaatggaaggggcctccggggtcttcggaa
aaggccgggaaacgttctgatggtaatttacaatctgagtcaactgatgttggaaaagcc
aagagacatgtggattttgaaggcgcagatgaacccatttttggaaagaagcccagggta
gaagagtccgtaactgaagacttaagtttggcagacttgatgcccagagtgaaagtgcag
tcagttgaaactgttgaagggtgtacacatgaggttgcacttcctgcagatgaagattat
gtaccacttaaacctcgagttggaaaagctgcaaaggaatacccgttcattcttgatgct
tttcagagagaagccatccagtgtgttgacaataatcagtctgttttagtctccgcacat
acatcagccggaaaaactgtatgcgctgagtatgccatcgcattggccttaagggaaaaa
cagcgggtaatatttaccagcccgattaaggctctgagtaaccagaagtaccgtgaaatg
tatgaagaatttcaagatgttggtctgatgacaggagatgttactattaatcctacggca
tcttgtcttgttatgaccacagagattttgagaagtatgctgtatagaggttctgaagtt
atgcgagaggttgcttgggtcatatttgatgaaattcattacatgagagattcagagcgt
ggtgtggtgtgggaagaaacgatcattttgcttcctgataatgtccactatgtctttctc
tcggctactatcccaaatgcccgacagtttgctgaatggatttgccatttacataagcag
ccttgccatgtgatttacacagattaccggcctactccactgcagcactacatcttcccc
gcggggggcgacggcctgcacctcgtggtagatgaaaatggtgacttccgagaagacaac
ttcaacaccgcgatgcaggttctccgggaggcgggggacctggcgaaaggcgaccagaag
ggccggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatgattatg
gaaagaaattttcaacctgtaattattttcagtttcagtaagaaagattgtgaagcctat
gctcttcaaatgaccaagttagatttcaacacagatgaagaaaagaagatggttgaggaa
gtgttcagtaacgcaattgactgcttgtcggatgaagataaaaagctccctcaggttgaa
catgtactgcctcttttgaagcggggaattggcatccaccatggtggtttacttcctatt
ttgaaagaaaccatagaaatcctcttttctgaagggttgataaaggcgttatttgcgacg
gagacttttgctatgggaattaacatgccagctagaacagttttatttacaaatgcccga
aaatttgatgggaaagactttcgatggatttcttctggtgaatacattcagatgtctggt
cgtgccggaaggagggggatggatgacagaggaatcgtgattcttatggttgacgaaaag
atgagcccaaccattgggaagcaactgcttaagggctcggccgaccctctgaacagtgca
tttcatttgacctacaacatggttctgaacctcctgcgtgtggaagaaatcaaccctgag
tacatgctggagaagtccttctaccagttccagcactacagagccattcccggggtggtg
gagaaggtaaggaactcagaagaacaatataataaaatagtcatacccaatgaagaaagt
gtggtcatctattacaagattagacagcagcttgccaaactgggtaaagaaattgaagaa
tatattcacaaaccaaaatattgcctaccatttctacaaccaggtcgtttggtaaaggta
aagaatgaaggagatgattttggctggggagtagtcgtgaatttctccaaaaagtcaaat
gttaagcccaactctggtgagctagacccactgtatgtggtggaagtgcttctgcgctgc
agccgagagagcttgaaaaactcggccacggaggctgcaaaaccggccaagcccgaggag
aagggggagatgcaggttgttccagtcctggtgcacctcctgtccgcgatcagcagtgtc
cggctctacatccccaaagacctccggcccctggacaacaggcagagcgtcctgaagtca
atacaggaagttcagaaacggtttccggacggtgttcccttgttggaccctatcgatgac
atgggcattcaagaccagggcctgaagaaggtcatccagaaagtggaggccttcgagcac
cgcatgtactcgcacccgctgcacaacgacccgaacctggagacggtgtacacgctctgt
gagaagaaagcacagatcgcaatagatattaaatctgcaaagcgtgaactcaagaaagca
agaacggtcctgcagatggatgagctcaaatgccgcaagcgcgtgctgcggcgcctgggg
ttcgccacgtcgtccgatgtcatagagatgaagggacgcgtggcctgcgagatcagcagt
gccgacgagctcctgctcaccgagatgatgttcaacgggctgttcaacgacctgtcggcg
gagcaggccaccgccctgctgagctgcttcgtgttccaggagaactccagtgagatgccc
agactgaccgagcaattggcggggccacttcgtcagatgcaggaatgtgccaaacgaatt
gcaaaagtctcagcagaagccaagttggaaattgatgaggagacttacctgagctccttc
aaacctcacctaatggacgtggtgcacacgtgggccacgggcgcgacgtttgcccacatc
tgcaagatgacagacgtctttgaaggcagcatcatccgctgcatgcggcgcctggaggag
ctgctgcggcagatgtgtcaggcggcgaaagccatcgggaacaccgagctggagaacaag
ttcgcggaaggcatcaccaagatcaagagggacattgtgtttgctgccagcctctacctg
tag
DBGET
integrated database retrieval system
