KEGG   Pempheris klunzingeri: 139199145
Entry
139199145         CDS       T11454                                 
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
pklu  Pempheris klunzingeri
Pathway
pklu03030  DNA replication
pklu03410  Base excision repair
pklu03420  Nucleotide excision repair
pklu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pklu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    139199145 (rfc1)
   03410 Base excision repair
    139199145 (rfc1)
   03420 Nucleotide excision repair
    139199145 (rfc1)
   03430 Mismatch repair
    139199145 (rfc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pklu03032]
    139199145 (rfc1)
   03400 DNA repair and recombination proteins [BR:pklu03400]
    139199145 (rfc1)
DNA replication proteins [BR:pklu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    139199145 (rfc1)
DNA repair and recombination proteins [BR:pklu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     139199145 (rfc1)
SSDB
Motif
Pfam: RFC1 AAA_lid_RFC1 BRCT AAA PTCB-BRCT AAA_22 AAA_5 RuvB_N AAA_30 AAA_17 AAA_33 Rad17 AAA_14 AAA_18 BRCT_2 AAA_7 AAA_16 nSTAND3 RNA_helicase NTPase_1 AAA_19
Other DBs
NCBI-GeneID: 139199145
NCBI-ProteinID: XP_070684271
LinkDB
Position
3:14054539..14065652
AA seq 1164 aa
MMDIRRFFAPSSAKPAVQKPAPNGNIKTEKKKNPLSSDEEVKNKKAAKGKNSKPEERGKE
SEKKRKKHAVIESDSEDEEPVRTSKKSPKEEKKMKTSKTEPPPKKDPVHYVSETDSDSDN
FQSLKKVSKPKQNGTARPAKSDADRAHPGAKEGLRSPSSTQGRPAVKSPTVPVTPKSAAP
PQPKQTPTSVLDYFGSATIQRSDKKLVASTKRKAPTQDTDDLLADEQIARQLQMDEDMEL
EKQVHEDEEFARTLAMLDEEPQAKKARKGSDEKPAPNLSTSKTSRRDSVSEDVISPSPKK
NPAPVKASSKLAMMKKKEQERDEGTKSKTSFSPTKIKISPKKEPLASTSSDKKFTPKTGT
TPTAVKISPKKPESTSTSPDDPEKKKANASAYRNYLNRDGPRALGSKEIPQGAENSLEGC
VFVLTGVLESMERDDAKSLIERYGGKVTGNVSKKTTYLVQGRDSGVSKFEKAESLGTKIL
DEDGLLELIRTKPGKKSKYEIAAETESKASKTRTPPSKPSKSTPKAQKISPSKGNSRSPH
TPSPSKTSLAQGHGVRTTPPGRGSRHTARRELSLSSSTASPSAPSSTGEGASLLWVDKYR
PHSLKAVIGQQGDKSCANKLLLWLQNWHRHHGGGASKPPAARFGKFGGGKDDGSGLKAAL
LSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVAESLNNTSIENFYKGTSQ
TVTSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKNSKIPIICMCNDRNHQKIRSLANYCFD
LRFQRPRVEQIKGAMMSIAFKEGIKIPPAALNEMILASNQDVRQVIHNLSMWSAKDKVMT
YDQCKADAAKARKDMKMGPFDVCRKVFASGEEANMSLIDKSDLFFHDYSLAPLFVQENYL
NVRPKAAGGDLKSHLVLLSKTADSICDGDVVDRRIRSGQNWSLLPTQAIYASVLPGELMR
GYMSQFPTFPSWLGKNSSTSKHSRIVQELASHMGLKTLCSRQAVNLDYLHYLRQALLSPL
QKHGAEGAGEAVQLLDDYQLIKEDVDSIMEISVWGGQPDPYSKLDSKVKAAFTRAYNKEV
HLTPYSLQVVKKGRRGGGAESEVFGEDVDNNEQESEDEGLKTDAMIKQKKAKTTKETTTK
KEKKEDSGKGKGKGKGKGTGKGKK
NT seq 3495 nt   +upstreamnt  +downstreamnt
atgatggacatcaggcggttctttgcaccatcatcagccaagcctgcggtgcagaaacca
gcccccaatggaaacatcaaaactgagaagaagaagaatcctctctcttcagacgaggaa
gtgaaaaacaaaaaggctgctaagggcaaaaactccaaaccagaggagagaggcaaggaa
agtgagaaaaaacgaaagaagcatgcagtcatagaatcagactctgaggatgaggagcca
gtgaggacgtcaaagaaatcccccaaagaggaaaagaagatgaagacgagcaagacggag
ccacctcccaaaaaggatcctgtgcattatgtctctgaaacagactcagacagtgacaac
tttcagtccttgaagaaagtctccaaacccaaacagaatggcacagccaggccagcaaag
tccgatgcagacagagctcatccaggagccaaagagggcctgaggtctccgtcgtccaca
caagggagacctgcggtgaagtcgcccactgtgcccgtcacccctaagtcagccgcgccc
cctcagcccaaacaaacccccacctccgtgctcgattacttcggcagtgcgactattcag
cgctcagataagaagcttgtcgccagcaccaaacgaaaggctccgactcaggacacagat
gatttgctggctgatgagcaaatcgccagacagctgcagatggatgaggacatggagctg
gaaaagcaggtccacgaggacgaggagtttgccagaacactagccatgctggacgaggaa
cctcaagcaaagaaggctcgtaaagggtcggatgaaaaaccagcccctaacctgagcaca
tcaaagaccagtcgaagggacagcgtgtcggaggatgtgattagtccgtctccaaagaag
aaccccgctcctgtcaaagccagctccaaactggccatgatgaaaaaaaaggagcaagag
agagacgaagggaccaagagcaaaacatcattttcgcccacaaaaattaaaatctctccc
aaaaaggagcctctggcgtcgacaagctcagacaagaagtttacacccaaaacaggaacc
acacccaccgcagttaaaatttctcccaagaaaccagagagcacaagcacgagtcccgac
gacccagagaagaagaaggccaatgcttcagcttacagaaactacctcaacagagatgga
ccacgagctctgggctccaaggagattccacagggcgcagagaactctttggagggctgt
gtgtttgtgttgacgggggtcctggagtccatggagagggatgatgctaaatccctcatt
gagcgctatggaggcaaagtgaccggcaatgtcagcaagaagaccacctacctggtgcag
ggcagagacagcggagtctcgaagttcgagaaggcggagagtttgggcaccaagatcctg
gatgaggacggtctgttggagctgatcagaaccaaaccaggaaagaagtccaagtacgag
atcgctgcagagactgagagcaaagcttcaaagacaaggactccccccagcaagccctcg
aagagtacccccaaagcccagaagatctctccctccaagggtaattccaggtcccctcac
accccgagtccgtcgaagaccagcttggcacaaggccacggtgtcaggaccactccccct
gggagaggctcaaggcacacagcccggagggagctgagcctttcctcctccacggcttca
ccttcagccccatcatcgaccggggagggtgccagtctgctgtgggtggacaaataccgc
ccacattctctgaaggctgtgattggccagcagggagacaagagctgtgctaataagctg
ctcctctggctgcagaactggcacagacaccacggcgggggcgcttccaagccaccagca
gcaaggtttggcaagtttggaggagggaaagacgatggatctggactcaaagctgctctg
ctctctggaccgccgggggtggggaagacgaccacagctgccctggtctgtgaggagctg
ggcttcagctacgtggagatgaacgccagctgtactcgcagcaaaaacagtctgaaggaa
gttgtcgcagagtcacttaacaacacgagcatcgagaacttctacaaaggcacgtctcag
acagtgaccagtaaacacgtcctgatcatggacgaggttgatggcatggctggtaacgag
gaccgcggaggaatccaggagatgatcggcctgatcaaaaattcaaagattcccatcatc
tgcatgtgcaacgatcgtaaccaccaaaagatcaggtccctggccaactactgcttcgat
ctgcgcttccagaggccgcgagtggagcagatcaagggagccatgatgtccatcgctttc
aaggagggaatcaagatcccaccggcagctcttaacgaaatgatcctagcctccaatcag
gatgtgcgacaggtgatccacaacctgagcatgtggtcggccaaagacaaggtgatgacg
tacgaccagtgcaaggctgacgcagccaaagcccgcaaggacatgaagatggggccgttt
gacgtttgtaggaaggtgtttgcctcaggggaggaggccaacatgagtctcatagacaag
tcggacctcttcttccacgactactcgctggcgccgctctttgttcaagagaactacctg
aacgttcggccaaaggctgcaggtggtgatctgaagtcccacctggtgttgctcagcaag
accgcagactccatctgcgacggagacgtggtggacagacggatccgctctgggcagaac
tggtcactgctgcccacccaggccatctatgccagcgtgctacctggagagctcatgaga
ggctacatgagtcagttccccaccttccccagctggctcggcaagaactcctccaccagt
aaacattcgcgcatcgtccaggagctggcctcgcacatgggcttaaagacgttgtgcagc
agacaggcggtgaacctggactacctgcactacctgcggcaggcgctgctgagcccactt
cagaaacacggagcagagggcgctggcgaagctgtgcagctgctggatgactaccagctc
atcaaagaggatgtggacagcatcatggagatcagcgtctggggcggacaacctgaccct
tactccaaactggactctaaggtgaaggcagcattcacgcgggcctacaacaaggaagtt
cacctgacgccgtactccctgcaggtagtgaagaagggccgccgtggtggtggagcagag
tcagaggtgtttggagaggatgtggacaacaacgagcaggagtctgaggacgagggcctc
aaaactgacgccatgatcaaacagaagaaggccaaaaccactaaggagacgacgacaaag
aaggagaagaaagaagattctgggaagggcaaaggcaaaggcaaaggcaagggcaccggc
aagggcaagaaatga

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