Pempheris klunzingeri: 139199483
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Entry
139199483 CDS
T11454
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
pklu Pempheris klunzingeri
Pathway
pklu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
139199483 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pklu04121
]
139199483 (slx4)
03400 DNA repair and recombination proteins [BR:
pklu03400
]
139199483 (slx4)
Ubiquitin system [BR:
pklu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
139199483 (slx4)
DNA repair and recombination proteins [BR:
pklu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
139199483 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139199483
NCBI-ProteinID:
XP_070684662
LinkDB
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Position
3:complement(20298049..20309287)
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AA seq
1797 aa
AA seq
DB search
MDDSDQDFVDLCSKLLKRVRKKPGEARQLRRAEQQACSQASAGDKKRRNNKRDADPGSKC
AGTQPVGTGAGTERHVVCGQAGRDAGDAAESSVVPSAAAAAGPRAERGLAAKDKVLIRMQ
QFKRASPQRMVHKDKSQPPNHSSECVPPPPLEQRQDTPECFSSDLHSEPQDSDEALALRL
QQELNREAAEAQPVEQEDGGLFFCQICHRDLSHMTPEGRTQHLNRCLDKSEESAPAPSPP
PPPPPPPGVPDCPICGKKFKSQKSRSAHLKRCSSDMGVSPAVLLQALQRQAEETQTDPTA
DTLTETGGTKRKGPSKPGHPARKKPRKKTEPLDEDTAVALALSSSLLEQEAQQCREREEQ
RLLQTGAAASHISMTAGLNLRPDTGKGRGKRKKGAVPRPPPLLLVQDAETAQRRLQERVA
ALLLRTRAPSPTSPTLCPSSLPGWSGAALLWQKSALLDGGSTCLTDFYTPELREFITPWE
SEKTDAASSSTISKSVSVVQPASEATPVAGTRTPVLPSSHTAAPSTPGTGKLPVSSQTLR
DLMELAEDGMTLTQCGYTASGPDRDKSDGQVTNLHLSGFVPEETEEQADLCASGFLPDDT
HSQARRATDRPAADKERGSRPSVTLCRLASDLSSMVNNPQLSDVQLQVDSGEVYFAHSFM
VYARCPLLAEMVHESGFGVQEEDMPAAQRVLMSDVPGQAVLVLLQYLYTARCSIQASLRP
HVLELASRFDLQELQQLCELHGEDAAARGGEEDYGNQTDQAFTELLHSMWMGEEDEDNDG
ADTDGGRDEERALEEERQANDLTLGDREIREEKVNEEELEEIYEFAATQRKREEEKDSVE
EETVDEEDDGEDVFMKLTEPKRSSEGLSVKIPQRNSQLETGPSLDRSYSRLFSDSWGFYE
EGDPSSIPSTSGAAKTHTPQTQRHQTSHKPSSELPGRTLLQSSASVVDDCSLSPPTSTSS
LPIPGQSPGHVGDSGADAVELNVLKENLPSMRESQSPRSICVALSPDLPEKKKEPELIVL
SDSSEEMEVVLSSRSPSPHSPCAVQNPQRYYTQIKPQPIPEPNEPAVQNIKPSSLELSPG
DSPAHGDRGSGCDQGPADCSPEVSWLIPSTPVQHRRSTATSSTQTKSSMCRTQLFPKGDT
SSPSVFSSSALPSNNRRPTSNSPVRDSTQICPTESSVPRLTLDKTTPSSSSFDLNFSSKR
TSDCDVSEDREVFAVPQCQPKLSQPSKQDTPLHLQPRPYSSTPLHTELHQPLVLLGTSPL
HSNHEEQRPQSKEKGGAPSESPEKTELGSFHLSPLSNPSDPPSPSSHRGLQRQSSSSSQS
RHSVESSRRDNTGPEPTRRGITKEDGERMTESENRDSSDAGEREEAKAESGEAEVAESSF
QSFMAMDEPPIAFNDSWGLDACVDSNPGCFSLRLEDSRGSSQQESRPGQRETNRSSSSAD
CQPSPSRHSGLSLKRRGSVTACSSSKVLSTQPSTSIQAHTDPYFTPSAPHPTTPEINNSL
LDSKIWESWEDDEEEALPLSQRVNPPAQLKTPASSYSKRCRSLGPITPMPHYSDLDTPDL
KNKLSRFGVRPLPKRQMILKLKEIHQYTHQLASSDSEDEAPCVGRTARMKPPSTTSVAAG
NKPASCAQTEKVKEARVTAAISPLKHGREEEAELLSASQSSNTSSIAASEDSERSNPELC
HSSSGDSDSDGGISASQATSRLQDRLQAVRSFILSDSELYTQILQYKPLVLSQFQERLKA
AGIRLGAAKLVDYLDSQCITFTTAKPGRSAPSRGRGKRKGKGAKAVGQRKRGVKATC
NT seq
5394 nt
NT seq
+upstream
nt +downstream
nt
atggatgactcggatcaggattttgtggatctctgctcaaagctgctaaagcgagtccgc
aagaaaccaggtgaggccagacagctgaggagagcagagcagcaggcctgcagtcaggcg
agtgctggggacaagaagaggaggaataacaaaagagatgctgaccctgggtccaagtgt
gctgggactcagcctgtcggcaccggtgcggggacagagcggcatgtggtctgtggacag
gctggacgtgatgcaggagatgctgctgagtcctcagttgtgccttcagcagctgcagca
gcaggaccgagagctgagagaggtttggcggcgaaagacaaagtgctcatcagaatgcaa
cagttcaagagagccagtccacagaggatggtgcacaaggacaagagccagccaccgaac
cacagcagcgagtgcgttcctcctccacctctggagcaaagacaagatactccagagtgc
ttcagctctgacctccactccgagccccaggacagcgacgaggctctggccctgcggctg
cagcaggagctgaacagggaggcagcagaggcccagccagtggagcaggaagacggaggc
ctgttcttctgtcagatctgccacagagacctgtcacacatgacccctgaggggcgcacg
cagcacctaaacaggtgtttagataagagtgaagagagcgctccagccccatctcctcct
cctcctcctcctcctcctcctggcgtccctgactgtcccatctgcggcaagaagttcaag
tctcagaagagtcgctcggcccacctgaagcgctgctcctcagacatgggcgtgtctccg
gctgtgctgctgcaggctctgcagagacaggctgaggagacgcagactgaccccactgct
gacacactcacagagactggaggcaccaaaagaaaaggcccgtccaagccgggacaccca
gcgagaaagaagccccgaaagaagactgaaccgctggacgaggacaccgctgtggccctg
gctctgtcctcgtctctgctggaacaggaggcgcagcagtgcagagaaagggaggaacag
aggctgttacaaacaggggctgctgcctctcacatttccatgaccgcagggttgaatttg
aggccagacacaggtaaggggcgtgggaagaggaaaaagggcgccgtccctcgccctccc
ccgctcctcctcgttcaggatgccgagacggctcagaggaggctgcaggaacgcgttgct
gctctcctcctacgcacccgggccccatctcccacctcaccgaccctctgccccagtagt
ctgcctggctggagcggtgctgccctcctctggcagaagagcgcgctgctggacggaggc
tccacctgtctgactgatttctacaccccagagctcagagagttcatcacgccttgggaa
tcagaaaagactgatgcagcctcctccagcaccatcagcaagtctgtgtctgtcgtccag
cctgcgagtgaagcaactcctgtcgcaggaaccaggacccccgtcctgccgtcctcccac
acggctgctccctccaccccaggcacagggaagctcccggtgagcagccagacactccga
gacctgatggagctggctgaagacggcatgaccctcacccagtgtggttacactgcttca
ggtcctgacagggacaagagtgatggtcaagtcacaaaccttcatctgagcggcttcgtc
ccggaggagaccgaggagcaggctgacctctgtgcgagcggcttcctaccagacgacacc
cacagccaagcgaggagggcgaccgatcggcccgcagcagacaaagagcgaggcagccgc
ccatcggtgacactatgcagactggcctcagacctgagcagcatggtgaacaaccctcag
ctcagcgatgtgcagctccaggtggacagtggagaggtctactttgctcattccttcatg
gtgtatgctcgctgccccctgctggccgaaatggtccatgaaagcggtttcggggtgcag
gaggaggacatgcctgctgctcagagggtgttgatgagcgacgtcccgggacaggcagtg
ttggttttgctgcagtacctctacacagcccgctgctccatccaggcatccctgcggcct
catgtactggagcttgcatccaggtttgacttgcaggagctacagcaactttgcgagctc
cacggagaggatgccgcggctcggggaggtgaggaagactacggcaatcaaacagaccag
gccttcaccgagctgctccactccatgtggatgggggaggaggatgaagacaacgatggt
gcggatacagacggaggaagggatgaggagagagcgttggaggaagaacgccaagccaat
gacctcacattaggtgacagagagattcgtgaggagaaggtgaacgaggaggagctggag
gagatctatgagtttgctgccacgcagagaaagagggaggaggagaaagacagcgtggag
gaggagacggtagatgaggaagacgatggagaggacgtgttcatgaaactgacggaacct
aaaagaagctctgagggcctcagcgtaaaaatcccgcagcggaactctcaactcgagacg
ggccccagcctggatcgcagctacagccgcctcttctcagactcctggggcttctacgag
gaaggagatccctcctccataccttctacttccggtgcagctaagacacacacccctcaa
acccaacgacaccagacctctcataaaccctcatctgagctgcctggcagaacattgctt
cagtcttcagcaagcgttgtcgacgactgttccctcagtcctccaaccagcacatccagc
ctaccgatcccaggccagtctcctggtcatgtgggtgactcgggagcagatgctgttgaa
ctgaacgtgcttaaagaaaatctgccttcaatgcgagaaagccaaagtcctcgtagtatt
tgtgtcgctctttcgcctgatttgcctgagaaaaagaaggaacctgagctcatagttttg
tccgactcgagcgaggagatggaagtagtccttagctcccgcagtccttcgccgcattct
ccttgcgccgtccagaacccgcagcgctactacacccagatcaaacctcagccgatcccg
gaaccgaatgaacccgccgtgcagaatataaagcccagcagtttagagctcagtcctggt
gactcaccagctcacggagatcgtggctctgggtgtgaccagggaccagcagactgttct
ccagaagtgtcctggctgatcccgtccacaccggtacagcatagacggagcaccgcgacc
agctccactcagaccaaaagcagcatgtgcaggacgcagctgttccctaaaggtgacacc
tcctccccctctgttttctcttcttctgctttaccgtcaaacaacagacgtccgacctcc
aacagtccagtcagagattctacccagatttgcccaacagagagcagcgttcccaggtta
acactggacaagacgactccaagtagctccagctttgatctcaacttctcttctaaaaga
accagtgattgtgatgtgagtgaagacagagaagtgtttgcggtgccccaatgccaaccg
aagctctcgcagccctcaaagcaggatacacccctccacctgcagccccggccttacagc
agcactcccctgcacacagagctccaccagccccttgttctcctcggcacctccccgctc
cacagcaaccacgaggagcagaggccgcagagtaaagaaaagggtggggcgccatctgaa
agcccagagaagactgagttagggagctttcatctgtcccccctgtctaacccttcagac
ccaccgtctccatcctctcacagaggtcttcagagacaaagcagctcctccagtcaaagt
cgacattctgttgaatctagcaggcgtgacaacacagggcctgagccaacgaggagggga
ataactaaggaggacggagaaaggatgacagagtctgaaaacagagactcaagtgatgca
ggggagcgggaagaagcaaaagcagaaagtggagaggcagaagttgctgaatccagtttt
cagagtttcatggccatggacgagccccccatagctttcaacgactcctggggcctcgat
gcatgtgtagattccaacccgggctgcttcagtctgaggctggaggacagcagaggatcc
agccagcaggagagccgcccgggccaacgagaaaccaacaggtcgtcatcctctgccgac
tgtcagccttcaccatctcgtcacagtggccttagtttgaagagacgtggcagtgtgact
gcctgctcttcatccaaagtcctcagcacacagccatccaccagcatacaggcccataca
gatccttacttcaccccttctgcacctcaccccaccacaccagagattaacaacagcctc
ctggactccaaaatatgggaaagctgggaggatgacgaggaggaggctcttcctctgtct
cagagggtgaaccctcctgcccagctcaaaacaccagcatcgtcgtacagtaaaaggtgt
cgctcccttgggcccatcactcccatgccccactactctgacttggacacaccagacctc
aagaacaaactcagcaggtttggtgttcggcctttaccgaagcgccagatgatcctcaag
ctgaaggagatccaccagtacacccaccaactggccagctccgactctgaggacgaggca
ccctgcgtgggccgcacggctcgcatgaagcccccgtccaccacttctgtggccgctggc
aacaagccggcctcctgcgcccagacagagaaggtcaaagaggccagagtgaccgctgcc
atctcccctctgaaacacggcagagaggaggaggcagagctgctgtctgcctcacagagc
tccaacacctcctccatcgctgccagcgaagactctgaaaggtccaacccagagctgtgt
cactcctccagcggtgactcagacagcgatggcggcatctctgcctcccaggcgacgtcc
cgcctccaggatcgcctccaggcagtgcgctccttcatcctgtccgattccgaactgtac
actcagatcctccagtacaaacccctggtgctgtcccagttccaggagcgactcaaggcg
gccgggatccgcttgggtgccgccaagctggtggactacctggactcccagtgcatcacc
ttcaccacggccaagccgggccgctcggcaccgagccgcgggcggggcaaaaggaaaggc
aagggggcaaaggcagtgggtcaaaggaaacgaggtgttaaagccacgtgttga
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