Pempheris klunzingeri: 139199885
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Entry
139199885 CDS
T11454
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
pklu Pempheris klunzingeri
Pathway
pklu03030
DNA replication
pklu03420
Nucleotide excision repair
pklu03430
Mismatch repair
pklu03440
Homologous recombination
pklu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
139199885 (rpa1)
03420 Nucleotide excision repair
139199885 (rpa1)
03430 Mismatch repair
139199885 (rpa1)
03440 Homologous recombination
139199885 (rpa1)
03460 Fanconi anemia pathway
139199885 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pklu03000
]
139199885 (rpa1)
03032 DNA replication proteins [BR:
pklu03032
]
139199885 (rpa1)
03400 DNA repair and recombination proteins [BR:
pklu03400
]
139199885 (rpa1)
Transcription factors [BR:
pklu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
139199885 (rpa1)
DNA replication proteins [BR:
pklu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
139199885 (rpa1)
DNA repair and recombination proteins [BR:
pklu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
139199885 (rpa1)
MMR (mismatch excision repair)
139199885 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
139199885 (rpa1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
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NCBI-GeneID:
139199885
NCBI-ProteinID:
XP_070685180
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Position
4:8949686..8976163
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AA seq
600 aa
AA seq
DB search
MTKLTEGAIEALANGNTVDDAVLQLVNIRKMDGANGLARFRVMMSDGLHSMSSFMLSTQL
NFMADENKLATNCICILKKHVTNIMKDGRRVVIILEIDVIKPAEDVAGRIGDPIPYNQAQ
NKGPQPVPNPEGRPPLQPQNRNEANRGFNRDFGKKALSAMPSTPGGGSKVVPIASLNPYQ
SKWTVRARVTNKSSIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFFSLIEVGKV
YYVSKGSLKIANKQYTSVKNDYEMTLNGESTVIPCEDSSDVPMVQCDFVSIADLENRDKD
AIIDVIGVCKSVDEVSRLTTKTNKEVSKRTFGLMDMSGKVVTVTLWGEEAEKFDGSGQPI
VAIKGAKLSDFGGRSLSASFSSTLMVNPDIPEAYKLRGWYDEEGHAMDGQSLTEVKGGSR
GGNTGWKTLSDVKTEHLGHGDKADYFTCKATIVYLRKENCLYQACPSQECNKKVIDQQNG
MYRCEKCDKEFPNFQYRLILSANIADYGDNQWVTCFQDSAETILGQNAAYLGQLKDSNEA
AFDEVFQQANFNTFVFRSRVKLETYNDESRIKVTLMDARPVDHKDYSKTLIMNIRRLAAQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagctcacagaaggcgccatagaggctctggcaaatggcaacactgtcgacgat
gcagtgcttcagttggtgaacattcgtaagatggatggagcgaatggtctggctcgcttt
cgggtgatgatgagtgatggactgcactccatgtcctctttcatgctctcaacccagctg
aacttcatggctgacgaaaacaagctggccacgaactgcatctgcattttgaagaagcat
gtgaccaatataatgaaggacggacgacgagtggtaatcatcttggaaattgatgtcatc
aagcctgctgaagatgttgctgggagaataggtgaccctattccttacaatcaggctcag
aataaaggcccgcagccagtgccaaaccctgaaggccgccccccactacagccacaaaat
agaaacgaagcgaacagaggtttcaatagagactttgggaagaaagccctatctgctatg
cccagtactccagggggcggctccaaagttgtgcccatcgccagcctcaacccctaccag
tccaagtggaccgtccgcgcccgtgtaaccaacaagagcagcatccgtacatggagcaac
tctcgtggcgatggcaaacttttctccatggagattgtggatgagagtggagagatacga
gtgactggattcaaccaagaggtggacaaattcttcagccttattgaggttggcaaggtc
tactacgtctccaagggctccctgaagattgccaacaaacagtacacatcagtgaagaat
gactacgagatgacgctcaatggagagtccactgtcattccctgtgaagacagcagcgat
gttcccatggtgcagtgcgactttgtctctattgctgacctggagaacagagacaaagat
gccattattgatgtgatcggagtgtgtaagagtgtggacgaagtgtcccgcctcaccacc
aagaccaacaaagaggtttccaagaggacattcggtctgatggacatgtccgggaaagtg
gtgactgtcacactgtggggagaagaagcagaaaagtttgatggctcggggcagcccatt
gtagccattaagggggcaaagctttcagactttggaggccggtccctctctgcatccttt
agcagcaccctgatggtcaacccagacatcccagaggcatataagctccgaggctggtat
gacgaggagggtcatgccatggatggacagtctctgacggaggtgaaaggtggcagcagg
ggaggaaacacaggctggaagactctatctgacgttaagactgagcacctgggacatgga
gacaaggccgactacttcacctgcaaagctaccatagtgtacctgcgcaaggaaaattgc
ctttaccaggcctgtcccagccaagagtgcaacaaaaaagtgatagaccaacagaatggc
atgtaccgctgtgaaaagtgcgacaaagagttcccgaacttccagtaccgcctcatcctt
tctgccaacattgcagattatggggacaaccagtgggtgacctgcttccaggacagtgca
gagaccatcctgggccagaatgcagcttacttaggacagctcaaggactcgaacgaagcc
gcctttgacgaggtcttccagcaagccaacttcaacacatttgtctttcgcagcagagtg
aagctagaaacgtataacgatgagtccaggatcaaggtcacactgatggacgcgaggccc
gttgaccataaggactacagcaagacgttgatcatgaacataaggagactggctgctcag
tag
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