KEGG   Pempheris klunzingeri: 139202908
Entry
139202908         CDS       T11454                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
pklu  Pempheris klunzingeri
Pathway
pklu03030  DNA replication
pklu03410  Base excision repair
pklu03420  Nucleotide excision repair
pklu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pklu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    139202908 (rfc4)
   03410 Base excision repair
    139202908 (rfc4)
   03420 Nucleotide excision repair
    139202908 (rfc4)
   03430 Mismatch repair
    139202908 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pklu03032]
    139202908 (rfc4)
   03036 Chromosome and associated proteins [BR:pklu03036]
    139202908 (rfc4)
   03400 DNA repair and recombination proteins [BR:pklu03400]
    139202908 (rfc4)
DNA replication proteins [BR:pklu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    139202908 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    139202908 (rfc4)
Chromosome and associated proteins [BR:pklu03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    139202908 (rfc4)
DNA repair and recombination proteins [BR:pklu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     139202908 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    139202908 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_lid_RFC1 Rad17 AAA_30 AAA_assoc_2 AAA_16 AAA_22 AAA_11 SLFN-g3_helicase Mg_chelatase DUF815 AAA_5 AAA_14 AAA_24 Gp44_lid AAA_19 RuvB_N AAA_28 KH_DUF2096_C Cdc6_lid ResIII DNAX_ATPase_lid AAA_7
Other DBs
NCBI-GeneID: 139202908
NCBI-ProteinID: XP_070688610
LinkDB
Position
6:1776610..1783850
AA seq 358 aa
MQAFLKGATVQTTRPQKDKAAAGPSTEKKARAVPWVEKYRPKCVDEVAFQEEVVAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKT
FAQLTVAGTRPDGKSCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYISR
IIEPLTSRCSKFRFKPLANQIQEERLLEICEKESLKYTKESIAALVRVSEGDLRKAITFL
QSAARLNVDKEITERTIVEIAGVVPPKMIDSLLQICFRGTFEKLEVAVRNMVDEGYAATQ
ILSQLHESIIEQDLSDKQKSAITEKMAVVGKCLSDGADEYLQMLSLCSVIMQQASHNN
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgcaggccttcctgaaaggagccactgtgcagactaccagacctcagaaagacaaggct
gcagcaggtcccagtacagagaagaaggccagggctgttccttgggtagaaaaatacagg
ccaaagtgtgttgatgaggtggcctttcaggaggaggtggtagcagtgctgaagaaatct
ctggaaggagcagatcttcccaacttgctcttttatggtcctcctggaacaggaaagact
tccactatcttagctgctgcccgtgaactttatggtccagagctgtacagacagagggtg
ctggagttaaatgcctctgatgaacgaggcatccaggtcgtcagagagaaggtcaagacc
tttgcccaactcacagtggccgggactcgcccagatgggaagtcgtgccctccctttaag
atcatcatcctggatgaggcagactccatgacatcagcagctcaggctgctctcaggcgg
acaatggaaaaggagtcccgcaccacccgcttctgcctcatctgtaactacatcagcagg
atcattgagcctctgacctccagatgttccaagtttcgcttcaaacctctagccaatcag
atccaagaagagcgcctgctggagatctgtgagaaggagagcctcaaatacaccaaagag
agtatagcagcattggtgagggtgtctgagggagacctgcggaaagccatcaccttcctg
cagagtgctgcacgcctcaacgtcgacaaggagatcaccgagcgcaccatcgttgaaatt
gccggggtcgtccctcccaagatgatcgacagtttactccagatctgcttcagagggaca
tttgagaaactagaagttgcagtcaggaacatggtggatgaaggctacgcagccacacag
atcctgagtcagctccatgagtctatcatagagcaggacctgagcgacaagcagaagtca
gccatcacagagaagatggcggtcgtaggtaaatgcctgtcagatggtgccgatgagtac
ttgcagatgttgagtctctgttcagtcatcatgcagcaggcctcccacaacaactga

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