Pempheris klunzingeri: 139203880
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Entry
139203880 CDS
T11454
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
pklu Pempheris klunzingeri
Pathway
pklu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139203880 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pklu03019
]
139203880 (skic3)
Messenger RNA biogenesis [BR:
pklu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
139203880 (skic3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_19
TPR_11
TPR_14
TPR_8
TPR_17
TPR_12
CFAP70_TPR_C
TPR_CcmH_CycH
CFAP70_mid_TPR
TPR_9
ANAPC3
TTC22_N
CABIN1_N
ANAPC8
PPTA
Fis1_TPR_C
ARM_TT21_C
CadC_C
TPR_Slam
TPR_Psidin_N
DUF6979
Sel1
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
139203880
NCBI-ProteinID:
XP_070689878
LinkDB
All DBs
Position
7:16405615..16419882
Genome browser
AA seq
1570 aa
AA seq
DB search
MSSKEVKTALKSAREAIKNKEFKEALKYCKAVLKLEKNNYNAWVFIGLAASELEQPDQAQ
TAYKKAVELEPEQLLAWQGLANLYEKTDQWDFKVELPNIYEKLVELYASSDKTKCYEVIR
KLSDIYQTDKEYSKLATVWLQLIQLKEEEAVDKKELLQLWQQMTQLLSDCLKVEEQDSET
QQHLITAFEKAMVLIDPVPGEEHQKVSADYVRCLSGLPQEEAKMKEACESMLSLYPKQSY
PLEVLCSHYLKTGFQNEDAVSCFSRLLDLVPDSGLGHLGLGTKALEEGRYKDAIKSLAQG
LKKMSSSTGWCSLAQTQFKMHRYSDSAVSCSQGVTVCVSGDKELRVKLLTLKLEALVRSG
GEKAADQALEAFSQIPDAEKDPVLVSLKGRAYLNKGKVDQALEVSSELLASNLNLAQAFV
LRGFSQLAQGQQQLAEESFLEATSQSPHCAEYYFLLGQLYWDMGEETRKDRSKAHTYLLK
AAKLDPHLGCVFRYLGHYYREVANDHGRARGCYKKAFELDDNDAESGAASVDLSMEQGDM
DTALALLQSVIEKATPGSAKWAWMRQGLYYLKVGEHQQATADLQAALRADPEDWVCWECL
GEAYLNRRSFTAALKAFGKAHQLQPSSIYSVYQAAAIKQTLGKFKEAVAEYLQITAQQDY
VPALKGLGECQLSLAKSLMEDCRDGGAIDLIQQAIKNLFRAVELRPDLSCLWKLLGDACS
AVSTVSPNRAQVVVPALLVGVEPNTQSHTLNQAQTLKVGERCYARALKLMSEVPSLWYDL
GLNYYRQSSLPCPTEGDQSSPSLLLEKAQQCLKKAIMMDSGNHSYWTALGVVSMSKGLEN
FALAQHCFIKSVQVEPNNVVAWTNLGTLYLKKDNIELAHEAFKIAQSLEPLYVNCWIGQA
LIAERVGSYDTMDLFRHTTELSTHMEGVKGYAYWVCSTLLDKSNRDSELYRYNIVQMNAI
SAAQVALSKYTERIQSDPDAFIMLGYLNEHLQLKRQALQAYQRAVELLRSMSSTEELAFA
LGSYGRALCTSGQWEEAVHVYNSTALQELSDLTGLALAYCKAGLIPDSINAYERALAVAS
SEKEKAYILTALALLQHRQGNLDSAKTLLFKCSMLKEPISESLLCLCALGLVHRDATLAS
AALAELLKQGSASGNVTEQRCLLTCGLLALQGNYSAVQREASRAVHSNPGNPSLWALLSR
LVPQYYPRKANGGAMAGHVACLSSMTQGKRALLYSGVNQLASGRHSGVDGHRNALKTMQR
AVLLCPDDPGTWAGLMAACHTENTSCYLSGSAPCRQGLEQILMSVVSEKVHGVDEIERPL
AQTLEGWVLQQAVSGLMLGGQLDQAEALCSQVLNVSPDHPAVMLLLRQVQCQRLLVSNAG
TVLPDSVLEQLNNTVMVNPTNLGAWHWLAEVYRSQGLLVQAVMAYRQSLQLASQLGLHSS
QVASLLRLASLALGPCMAGLPGKDWTDLIQEATTEVLKLGSSPMAFLFQALLQYMTKMAA
RETRRLLERLVYVPSQDFPVTVVQVASWYLLRHLHAKNDQELMNVLLQHAKMNRDQRLLE
FHSLLASSSS
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaagaagtgaaaacggcactgaaaagtgccagagaggctataaaaaacaaa
gagttcaaagaggctctaaaatactgcaaggctgttttgaaactagagaagaacaattat
aatgcatgggtgttcatcggcttggcagccagtgagctcgagcaacctgatcaggcacag
acagcttataaaaaggccgtggagctggagcctgagcagctactggcatggcagggcttg
gccaatctttatgagaagactgaccagtgggatttcaaagttgagctaccaaacatctat
gaaaagcttgttgagctgtatgcaagctctgacaaaactaaatgttatgaggtgatcaga
aagctgtcagatatctatcagactgacaaagaatattcaaagttagcaacagtttggctg
cagctcattcagctgaaggaggaagaggctgtggacaagaaagagctactgcagctatgg
caacagatgacccaactcctttcggactgccttaaagtggaagagcaggacagtgaaact
caacagcatttaatcacagcatttgagaaagccatggttctcatagatcctgtgccagga
gaggaacaccagaaggtctcagctgactatgtcagatgtctttcaggactgccacaagaa
gaagccaaaatgaaagaggcatgtgagtccatgctgtccctctaccccaaacaaagttat
cctcttgaagtcctttgttctcactacctcaaaacagggtttcagaatgaggatgcagtc
agctgtttctcccggctcctggatctggtccctgacagtggattaggtcacttgggtctg
ggcacaaaagcgcttgaagaaggaaggtataaagatgccattaagagccttgcacaaggg
ttgaagaaaatgagctccagtacaggatggtgcagtctggctcaaactcagtttaaaatg
cacagatactcagacagtgctgtatcctgctcccaaggtgtgaccgtgtgtgtgtctgga
gacaaggagctgagggtcaaactgcttacgctgaaactagaggctttagtcaggagtgga
ggagagaaggctgcggaccaggctttggaggcattttcacagatcccagatgctgaaaaa
gatccagttctggtatctctgaagggacgtgcgtaccttaataagggaaaagttgatcaa
gcacttgaggtgtcgtcagagctgctggcctcaaaccttaacctggcccaggcgtttgtg
ctgaggggattttcacagctggctcagggccagcagcagcttgcagaggagagcttcctg
gaggcgaccagccagagcccacactgtgcagagtattatttcttgctgggacaactctac
tgggacatgggagaagagacccgtaaagacaggagcaaagcccatacatatttgctcaag
gctgcaaagttagacccacaccttggttgtgtattccgataccttggacactattaccgg
gaggtggctaatgatcatggccgggcacggggctgctataagaaggcctttgagttggac
gacaatgatgccgagtctggagctgcctcagttgatctcagtatggagcagggcgatatg
gacaccgccttagcactgcttcagtcagtgattgagaaagccactccaggctcagctaaa
tgggcttggatgaggcaagggttgtattacctgaaggtcggagagcatcaacaagctaca
gctgatctgcaggcagctctgagagcagatccagaggactgggtgtgttgggagtgttta
ggtgaggcctacctaaaccgccggagcttcacagctgctctgaaggcctttggtaaggcc
catcagcttcaaccctcctctatatacagtgtctaccaggctgctgcaatcaaacagacc
ctgggcaagttcaaggaggcggttgcagagtacctacagatcacagcgcagcaggactat
gttcctgctctgaaaggtcttggggaatgccagctgtctctggcaaaaagtttgatggaa
gactgcagagatgggggagccattgacctcattcagcaagccataaagaacctgttcaga
gcagtggagctgcgtccagacctgtcttgtttgtggaagctgctgggagatgcttgctcc
gcagtcagcaccgtgtccccaaacagagcccaggttgtagtgccggccctgctggttggc
gtagagcccaacacccagagccacacactgaaccaggcccagacactgaaagtcggtgag
aggtgttatgcccgtgccttgaagctgatgtctgaggtcccgagtctttggtatgaccta
ggactcaactattaccgccagtccagcctcccctgccctacagagggagaccaaagctcc
ccatctctgctcctggaaaaggctcagcagtgtctaaaaaaggccatcatgatggacagt
ggaaatcatagctattggactgccttgggagtggtatccatgagcaaaggtcttgaaaac
ttcgctctggctcaacattgcttcatcaagtccgtacaagttgaacctaataatgttgtt
gcttggaccaacctcggtaccctgtatttgaagaaggacaacatagagcttgcacacgag
gccttcaagattgcccagtcccttgagccgctttatgtcaactgctggatcggacaggcg
ctgattgcagagagagtgggaagctacgacaccatggatcttttcaggcacaccactgaa
ctgagcacacatatggagggagtgaaaggttatgcctactgggtgtgctccacactgctg
gataagagcaacagagactctgaactgtaccgctacaacatagtccagatgaacgccatc
tctgctgctcaggtggcactcagcaaatacacagagcgtatccagtctgaccctgatgcc
ttcattatgcttggctacttgaatgagcatctgcagcttaagagacaggccttacaggca
taccaaagagctgttgaactgcttcggtccatgtcctcaacagaagagctggcttttgct
ctgggcagctatggccgtgctttgtgcacctcaggccagtgggaggaggcggtgcatgtt
tataattctacagcactgcaggagctcagtgacctgactgggctggccctggcctactgc
aaggcaggactcatcccagacagcatcaacgcctatgaacgtgccctggctgtggcttcc
agtgagaaggagaaggcttacatcttgacagctctggccctgcttcagcaccggcagggt
aacctggactcagccaagactctgctgtttaaatgctcgatgttaaaggagccaatctca
gagtctctgctgtgtttgtgtgccctgggattggtacacagggatgctacactagcttct
gctgccctggctgagctactgaagcaaggctctgcttctgggaatgttacagagcagcga
tgcctgctcacctgcggtttgctggccctgcagggcaactacagcgcggtgcaaagagag
gcttccagagctgtacacagcaatcctggaaacccatctctgtgggccctgctgtccaga
ctggtaccacaatactaccccaggaaggcaaatggcggagcgatggctggtcatgtcgcc
tgcttgtccagtatgactcaaggaaagagggcgttgttgtacagtggagtcaaccagctg
gcaagcgggagacactctggagtggacggtcacaggaatgcgctgaagactatgcagaga
gctgtgctgctctgtcctgatgatccaggaacttgggcggggttaatggccgcctgtcac
acagaaaacacctcctgttatctttcagggtcagctccttgcagacaaggactggagcaa
atcctcatgtcggtggtttctgagaaagtgcatggtgtggacgagatagagcgccctctg
gcccagactctggagggctgggtactacaacaggcagtgagtggtctcatgctgggagga
cagctggaccaggcagaagccctctgctcacaggtgctgaatgtttctccagatcaccca
gcggtgatgctgttactgagacaggtgcagtgccagcgcctccttgtgtccaacgctggc
actgtcctcccagactcagtgctagagcaactaaacaacaccgtgatggtgaaccccacc
aaccttggagcatggcattggctggctgaggtgtatcgtagccagggcctgctggtccag
gcagtcatggcctacagacagagtctacagctagcctcacagcttggcctgcacagcagc
caagtagccagtctgctccgactcgcctcgctagccctaggaccctgtatggcgggtctc
ccaggaaaggactggacggacctgatacaagaagccaccactgaagtcttaaagctgggt
tcatcccctatggccttccttttccaagccctgctccagtacatgaccaagatggctgcc
agggaaacaaggcgtctgttggagaggctggtatacgtcccctcccaagactttcctgtg
accgtggtgcaggtggccagttggtacctcctcagacacctgcatgcaaaaaacgaccag
gaactaatgaatgtacttttgcagcatgccaaaatgaatagagatcaaagactgctggag
tttcattcactgcttgcctcttcgtcctcctga
DBGET
integrated database retrieval system
