Pempheris klunzingeri: 139204974
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Entry
139204974 CDS
T11454
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pklu Pempheris klunzingeri
Pathway
pklu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139204974 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pklu03041
]
139204974 (dhx16)
Enzymes [BR:
pklu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139204974 (dhx16)
Spliceosome [BR:
pklu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
139204974 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
Cas3-like_C_2
Flavi_DEAD
ABC_tran
Motif
Other DBs
NCBI-GeneID:
139204974
NCBI-ProteinID:
XP_070691126
LinkDB
All DBs
Position
8:22260256..22274381
Genome browser
AA seq
1050 aa
AA seq
DB search
MANLEQWVNDRLHDILGLSDRYVSQFMIGTARRASSGQDFVTRLEQTGTIDINQSVIAFA
QELFDKIPRKQVVEKPSREMERQAIEMDRKNRTYTLLEDSDSDGEAVREKQKGKKKSKDK
DRGSKRRHIRQKKESESSSEDEAPKKDYKSVKKDEEEEEEEEWEKEERERKQDIEERDAF
AERMKQKDKDKTRNIAERTDKKAYEEAQKRLKMAEDDQKNMLPELRKHSRWEYLKKREAE
KLEDLDAEIKDDEYLFHTEELTERERKELEYKRTLRDLAKDYKKAGAKEQEERRNRYYMP
EEKRSKEVPQKDLMLEETPMELGGEQGRWEEERLKTASLSFGAKKERELGMRHEQEKYQL
ILEEDEMIDFVSTAITMKGTRNEKDQEAPALSQAELNKQSMQEVRRSLPIFPYREDLLAA
INEHQILVIEGETGSGKTTQIPQYLLEDGYTNGGMKIGCTQPRRVAAMSVAARVAQEMSV
KLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTDI
LFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPEADY
LEACVVSVLQIHVTQSPGDILVFLTGQEEIEASCEMLQERCRRLGSKIAELLVLPIYANL
PSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIV
TPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLKSLG
INDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILAS
EQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYTQWVES
GYSTQWCYENFIQFRSMRRARDVRDQLEGLMDRIEVEVVSSKEDSLPIRKAVTAGYFYHT
ARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIESSWLLEV
APHYYKSKELEDSSSKKMPRKQGKTKEELG
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctagagcagtgggtgaatgaccgtctccatgacatcctcgggttgagcgac
agatatgtgtctcagttcatgatcggcactgcgcggagagcatcgagcggtcaggacttt
gtgactcgtctcgagcagacgggcacgattgatatcaaccagagtgttattgcctttgca
caggagctgtttgacaagattcctcgcaagcaggttgttgagaaaccgtcccgggagatg
gaacggcaagccattgaaatggacaggaagaatcggacgtacacgttactggaggacagt
gacagtgatggagaggctgttcgggagaagcagaaagggaaaaagaaaagcaaggacaag
gacagaggaagcaagaggaggcacatcagacagaagaaagagagcgagtcgtcgagtgag
gacgaagcacctaaaaaagactacaaatcggtcaagaaagatgaggaggaggaggaggaa
gaagagtgggagaaggaggagagagagcgaaaacaagacatcgaagagagagatgcgttt
gccgagagaatgaagcagaaggacaaagacaagactcgcaacatagcagagaggacagac
aaaaaggcttacgaggaagctcagaagaggctaaagatggctgaagatgatcagaagaat
atgttgccggagttgaggaagcactctcggtgggagtatctaaagaagagagaggcagag
aagctggaggacctggatgcagagatcaaagacgatgagtaccttttccatacagaggag
ctgactgagagggagagaaaggagttggaatacaaacgcacccttcgggacctggcgaaa
gattacaaaaaggccggtgccaaagaacaggaggagaggaggaacagatactacatgcca
gaagagaagaggagcaaggaggtgccccagaaggacctgatgctggaggaaactcccatg
gagctgggaggagagcaaggccgctgggaggaggagaggctgaagacggcctccctcagc
ttcggcgccaagaaggagcgagagctagggatgaggcatgagcaggagaagtaccagctg
atcctggaggaggatgagatgatcgactttgtcagcaccgccatcaccatgaagggaact
cggaacgaaaaggatcaggaggctccggctctgtcccaggcggagctgaacaaacagtcc
atgcaggaggtccgacgcagcctgcccatctttccctacagagaggacctgctagccgcc
atcaacgagcaccagatcctggtcatcgagggggagacgggctccgggaagaccacccag
atcccacagtacctcttggaggatggctacactaacggaggcatgaagattggatgtaca
cagcctcgaagagtggcagccatgtcagtggcagcccgagtggcccaggaaatgagcgtc
aagcttgggaatgaggtgggctacagtattcgttttgaggactgtacatcagagaggaca
gtgctcaagtacatgacagacggcatgctgctccgagagtttcttactgagcccgacctg
gccagctacagtgtgatcatcatagatgaggcccatgagcgaacgcttcacacagacatc
ctgtttggtctgattaaggacatcgccaggttcagaccagacctgaaggtgctggtggcc
agcgccactctggacacagagcgcttctcctgcttctttgacgacgcgcctgtcttcagg
atccctggcaggaggttccccgtcgatatcttctacactaaagctccagaggcagactac
ctggaagcttgtgtggtgtcagtcctgcagatccacgtcacccagtctcctggagacatt
ctggttttcctcacaggacaggaggagatcgaagcgtcgtgcgagatgctccaggagaga
tgcaggcggcttggttctaagatagcagagctgctggtccttcccatctacgccaacctg
ccgtctgacatgcaggcgaagatcttcaaccccactccacctggagcccgtaaggtggtg
gtggctaccaacatagcagaaacctcactgaccatagatggcatcatctacgtcattgac
ccaggcttctgcaaacagaagagttacaacgcccgcaccggcatggagtctctcatcgtc
acgccctgctcacgggcttcagccaaccagagagcgggccgtgcaggcagagtggctgct
gggaaatgtttcaggctttacacagcttgggcctttaaacatgagatggaggaaacgact
gtgcctgagattcagaggaccaacttgggaaatgtagtcctgctgctaaagagtctagga
attaatgacctcattcactttgacttcatggacccacctcctcatgagactctggtctta
gcgctggagcagctgtacgccctgggagcactcaaccacctgggagagctcaccaagctg
ggtcgcaggatggccgagctgccagtggaccccatgctgagcaagatgatcctcgcctcc
gagcagtacaagtgttcggaggaagtgttgacgattgctgccatgctgtcagtgaacaac
tctattttctaccggcccaaggacaaggtggtgcacgctgacaacgcacggatgaacttt
gtggtgccagggggagaccacctggtgctgctcaacgtctacacacagtgggtggagagc
ggttactccacacagtggtgctacgaaaacttcatccagttccgctccatgagaagagcc
cgggacgtcagggaccagctggagggtctgatggatcggatagaggtggaggtggtcagc
tccaaggaagacagcttgcccattcgcaaggcggtgacggcgggatatttctaccacacg
gcgcgactgagcaaaggcggctacaagacggtgaagcaccagcagacggtctacgtccac
cccaacagctctctgttcgaggagcagccccgctggctcatctaccacgagctggtcttc
accactaaggagttcatgagacaggtgatcgagatagagagcagctggctgctggaagtg
gctcctcactactacaagagcaaagagctggaggacagcagcagcaagaagatgccccgc
aagcagggtaaaacaaaagaggagctgggctga
DBGET
integrated database retrieval system
