Pempheris klunzingeri: 139210459
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Entry
139210459 CDS
T11454
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
pklu Pempheris klunzingeri
Pathway
pklu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
139210459 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pklu03400
]
139210459 (msh6)
DNA repair and recombination proteins [BR:
pklu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
139210459 (msh6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
139210459
NCBI-ProteinID:
XP_070696537
LinkDB
All DBs
Position
12:1818433..1825648
Genome browser
AA seq
1389 aa
AA seq
DB search
MAKQSSLFSFFTKSPPPASKPKPKPSPSPTEADLPSAVEKSSSSPKEQARQTQQQAAKTG
RPNPKSSAKPVKDGFKKLFGDKAPAGSRRSSPSCPFSAGALVWAKLEGHPWWPCMVVPQP
LSGRQMRDGRVHVHFFDEPPTRGWVSTKYIREYQGSDSSDAKTGGVFFSSKPVIRRAMEL
ADAVMFDSPEKRLKMPLCVDPSDEEEEEEEDEEMELDKSTVTDEEISDDDEQKDVEVKPS
KVSRRSSRASTEKGNKAKRRRIIVASDSDGSDEEFKPEQAASSSEDEDEGGMVNSEEEEE
ESTQESEAESPIKPVKRKRPAEKAAATTTKTPAATTTKTPAAPSNAPKRAPAAVTANMKS
RLSAFSAPDNFESQANGSGSSGGATVWDHEKLEWLQDGRRKDSKRRRQSEDGYDPTTLYV
PEDFLNRNTPGMRRWWQLKSQMFDTVIFYKVGKFYELYHVDAVIGVNEMGLTFMKGTWAH
SGFPEIGFGRFSDVLVQKGYKVARVEQTETPEMMETRCKTMAKPTKFDRVVRREVCRIIT
RGTQTYSVLDGAPSESQSKFLLSLKEKAEEESSGRCRVYGVCFVDTSVGYFHVGQFPDDR
HCSRLRTLIAHFAPAEVLFEKGNPSAETRKILKASLSSALQEGLNAGTQFWDAQKTLKTL
SEEDYFRETAGKDQGTEGGFLPPLLKEMTSESDSLCLTPKEGRELALSALGGCIFYLKKC
LVDQELLSMANFEEYVPVDVEMENAAGPASFFARTCQRMVVDGVTLANLEIFQNGSGGTE
GTLLERLDTCSTPFGKRLLKQWLCAPLCNPTSIRDRLDAVEDLMGAQAQATEASDLLNKL
PDLERLLSKIHSIGTVKGQDHPDSRAVLYEEVTYSKRKIADFLSALEGFNTMQEIISILA
PVSDECRSALLRQVVSLKSGKSGSFPNLSAELKRWETAFDHQKARTTGVITPKAGFDPEY
DQALTGIKSCERELQDYLDRQKKRLGCKNMAYWGTGRNRYQMEVPDSVSERNIPEEYDVK
STKKGWKRYVTKETERLFSELQGLEEKRDAALKDCMRRLFYNFDKNYRDWKTAVECMAVL
DVLLALSRYSQGGDGSMARPEVVLPEGGDQAETFLELTGSRHPCVTKTFFGDDFIPNDIY
IGRPGSGESAEEKGRASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVD
RVFTRLGASDRIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAV
VKELAEKICCRTLFSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFIT
GACPKSYGFNAARLASLPEEVIQSGHRKAREFEKSTVNVRLFKKLCQFAEDATLGSTHFA
SLVQTLSTL
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctccctgttcagcttcttcaccaagtctccgccgccggcatccaag
cccaagccgaagccgagtccctccccgaccgaggcggacctgccctcggccgtggagaag
tccagctcctctcccaaagaacaagccaggcagacccagcagcaggcggccaagaccggc
aggccaaacccgaagagcagcgccaagcctgtgaaagatggattcaagaaactgttcggc
gacaaggccccagcaggaagtagacggagcagtccctcgtgtccgttcagcgccggtgcc
cttgtgtgggcaaaactggagggacacccctggtggccgtgcatggtggtaccccaacct
ctgagcggacgacagatgagagacggccgcgttcacgtccacttcttcgacgaaccccct
acgagaggatgggtcagcaccaaatatatccgagagtaccaaggctccgacagcagcgac
gccaaaaccggaggggtgttcttcagcagcaagcctgtgatccgtcgtgctatggagctg
gctgatgcggtcatgtttgatagccccgaaaaaagattaaagatgcctctgtgtgtggat
ccgtctgatgaggaggaggaggaggaggaggatgaagaaatggagcttgacaaatcaaca
gtgactgacgaagagatcagtgatgacgatgaacagaaagatgtggaggtgaagccatcc
aaagtcagccggcgttcgtcccgtgcttcaacagaaaaaggaaataaggccaagcgccgg
cgcataatcgtcgcctcggacagcgacggatcagacgaggagttcaagccggaacaagcc
gcgtccagcagtgaggatgaggacgaaggcgggatggtgaacagtgaagaggaggaagag
gagagcacgcaggagtcggaggcagaaagccccatcaagcccgtaaagcgtaaacgtcct
gcagagaaggctgctgccacaacaacaaagacgcctgctgccacaacaacaaagacgcct
gctgcaccgtctaacgcaccaaaacgagctcctgcagccgttacagccaacatgaagtcc
cgtttgtcagccttctctgcgcccgataactttgagagccaggcaaacggatcaggctcc
agcgggggcgccaccgtttgggaccacgagaagctggagtggttgcaggacggcaggagg
aaagacagcaagcggcggcgacagagtgaggacggctacgatcccacgaccctgtacgtg
ccggaggacttcctgaacagaaacactcccggtatgcgccggtggtggcagctcaaatcg
cagatgtttgacaccgtcatcttctacaaggtggggaagttttacgagctctaccacgtg
gacgctgtgatcggagtcaacgagatgggactgaccttcatgaaggggacctgggcgcac
tcgggctttccggagatcggctttggacgtttctcagatgtgctggtccagaaagggtac
aaggtggctcgggtggagcagacggagaccccggagatgatggaaacccgctgtaagacc
atggccaagcccaccaagtttgaccgcgtggtgagaagagaggtgtgccggattatcacc
cgcggtacccagacctacagcgtgttggacggcgctccctctgagagccagagcaagttc
ctgctgagtttaaaggagaaggctgaggaggaaagctcagggcggtgccgcgtctacggc
gtctgcttcgtagacacttctgtgggttatttccacgtgggtcagttcccggacgatcgt
cactgctcacgtctgcgcaccctgatagcacactttgcccccgctgaggtgctctttgaa
aagggaaacccgtctgctgaaacacgcaagatactcaaggcctctctgtcgtcggctctg
caggaaggtctcaacgcaggcacccagttctgggacgctcagaagactctgaaaaccctt
tcagaggaagattacttcagagagactgctggcaaggatcaggggacagagggcgggttt
cttcctcctctgctaaaagaaatgacctctgagagtgattctctgtgcctcactcccaaa
gaaggccgtgagctggctctgtcagcgctgggcggctgtatcttctacctgaagaagtgt
ctggtggaccaggagctgctctccatggctaactttgaagaatacgtccctgtggatgtt
gagatggagaacgctgctggacctgccagtttctttgcccggacgtgtcagcggatggtc
gtcgacggagtgactctggccaacctggagatctttcagaatgggtcaggaggaacagaa
gggaccctgctggagcgtttggacacctgctccaccccttttggcaagaggctgctgaag
cagtggctctgcgctcctctgtgtaaccccacgtccatcagggacagactggacgctgtg
gaggacctgatgggcgctcaggcccaggccacagaggcttcagacctgctgaacaagctc
ccagacttggagcgtcttctgagtaaaatccacagcattgggacggtgaagggccaggac
catcccgacagcagagcggttctctatgaggaggtgacctacagcaaacgcaagatcgca
gacttcctctcggcgctggagggcttcaacactatgcaggagatcatttctatcctcgct
ccggtttcagatgagtgccgatccgcattgctccgtcaggtcgtgagcctgaaaagtgga
aaaagcggctcgtttcccaacctgtctgccgaactcaagcgctgggagacggccttcgac
caccagaaagcccgaactaccggcgtcataacccccaaagctggctttgacccagagtac
gaccaggctctgactggaatcaagagctgcgaacgagagctgcaggactacctggacaga
cagaagaagagactgggctgtaaaaacatggcgtactggggtaccgggagaaaccgctac
cagatggaggtgcccgacagcgtctcggagaggaatattcctgaggagtacgatgtgaag
tctacaaagaaaggctggaagcgttatgtgaccaaggagacggagcgtctgttctcagag
ctacaaggactcgaggagaagagagacgctgcgctgaaagactgcatgaggaggctcttc
tacaactttgacaagaactacagagactggaaaactgctgtggagtgcatggcggtgctg
gacgtgctgctggccttgtcgcgctacagtcagggtggagacggatcgatggccaggcca
gaggtggtgctccccgagggcggcgaccaggctgagaccttcctggagctcactggatcc
cgtcacccatgtgtcactaagaccttttttggggatgacttcattcctaacgacatctac
atcggccgcccgggcagcggagagagcgccgaggaaaaaggccgtgcctcctgtgtgctc
gtcacggggccaaacatgggtggaaagtctactctcatgagacagtgtgggctggtgatc
atcttagctcagctgggctgctacgttcctgcagagagcctcagattcaccccggttgac
agagtcttcactcggctgggagcctctgatcgcatcatggctggagagagcaccttcttc
gtggagctgagtgagacggccagcatcctgcaccacgccaccaaacactccctggtgctc
ctggacgagctgggaaggggcacagccacatatgacggcacagcgatcgccagcgctgtc
gtgaaggagctcgctgagaagatctgctgtcgcacgctcttctccacacattaccactcc
ctggtggaggactacgccaacaaccctgctgtgaggttgggccacatggcgtgcatggtg
gagaatgagtgtgaggacccgagccaggagaccatcacgttcctctacaagttcatcacc
ggcgcttgtccgaagagttacggcttcaacgctgcccgactcgccagcctgccggaggag
gtcatccaatctggacacaggaaggcccgagagttcgagaagagcaccgtcaacgtcagg
ctgttcaagaagctctgccagtttgctgaggatgcgacgctgggcagcacacacttcgcc
tccctcgttcagacgctcagcaccctgtag
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