Pempheris klunzingeri: 139213554
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Entry
139213554 CDS
T11454
Symbol
hmgb1a
Name
(RefSeq) high mobility group protein B1a
KO
K10802
high mobility group protein B1
Organism
pklu Pempheris klunzingeri
Pathway
pklu03410
Base excision repair
pklu04140
Autophagy - animal
pklu04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
139213554 (hmgb1a)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139213554 (hmgb1a)
09143 Cell growth and death
04217 Necroptosis
139213554 (hmgb1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pklu03036
]
139213554 (hmgb1a)
03400 DNA repair and recombination proteins [BR:
pklu03400
]
139213554 (hmgb1a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pklu04147
]
139213554 (hmgb1a)
Chromosome and associated proteins [BR:
pklu03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
139213554 (hmgb1a)
DNA repair and recombination proteins [BR:
pklu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
139213554 (hmgb1a)
MMR (mismatch excision repair)
Other MMR factors
139213554 (hmgb1a)
Exosome [BR:
pklu04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
139213554 (hmgb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
139213554
NCBI-ProteinID:
XP_070700385
LinkDB
All DBs
Position
14:14272433..14276799
Genome browser
AA seq
207 aa
AA seq
DB search
MGKDPTKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSAKEKGKFE
DLARQDKARYEREMMNYVPVRGGKKKKKYKDPNAPKRPPSAFFIFCSEFRPKVKGESPGL
SIGDVAKRLGEMWNGTTSEDKQPYEKKAAKLKEKYEKDVAAYRAKSKTGGSAPGKAPAKA
EKKDDDDDDEDDDDEEEEEDYDDDDDE
NT seq
624 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagatccaaccaagccaaggggcaagatgtcctcctatgcctattttgtccag
acctgccgggaggagcacaagaagaaacatcccgaggcttcggttaactttgccgagttc
tccaagaagtgctctgagcgatggaagacaatgtctgccaaggagaagggcaaatttgag
gacctggccaggcaggataaggcgcgctatgagagggagatgatgaactatgttccagtc
aggggaggcaagaagaagaagaagtacaaggaccccaatgcccccaagagacccccatct
gccttcttcatcttttgctcagagttccgccctaaggtgaaaggtgagagccctggtctg
tccattggagacgttgccaagaggctgggtgagatgtggaacggcaccacctcagaggac
aagcagccctacgagaagaaggctgctaaactgaaggagaagtatgagaaggatgtggca
gcatatcgcgccaagagcaaaacaggcggcagtgcaccaggaaaagccccagccaaggca
gagaagaaggacgatgacgatgatgatgaggacgacgatgacgaggaggaggaggaagac
tatgatgatgatgatgatgagtag
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integrated database retrieval system