Pempheris klunzingeri: 139214139
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Entry
139214139 CDS
T11454
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pklu Pempheris klunzingeri
Pathway
pklu03013
Nucleocytoplasmic transport
pklu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139214139
03015 mRNA surveillance pathway
139214139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pklu03019
]
139214139
Enzymes [BR:
pklu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139214139
5.6.2.5 RNA 5'-3' helicase
139214139
Messenger RNA biogenesis [BR:
pklu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139214139
mRNA cycle factors
Common to processing body (P body) and stress granule
139214139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
NAT10_TcmA_helicase
DEAD
SRP54
UvrD-helicase
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
139214139
NCBI-ProteinID:
XP_070700998
LinkDB
All DBs
Position
15:5492156..5505754
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AA seq
1114 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDHQVNG
PDGVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRTSNMYFQTHDQIGMIGTGPSPMTSMNI
PIPFNLVMPPIPPPGYMGQVNGPSAGRGGGMKGKAGSGGGGGTRGGRQRNRGNMGNHSGG
NGDRGQHGGHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLG
DEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctaacgttcctcgacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgacttcaccctg
ccgagccagacccagacccaaggccagacccagagccagctagaccaccaggttaatggc
cctgacggggtgctacagaatggagatgaccctgtggttaaagccagtcagctgctggct
gagttgaactttgaggaggatgaggaggacacctactacaccaaggatcttcctatccac
gcctgcagttactgtgggattcatgatccagcctgtgtcgtctactgcaacaccagcaag
aagtggttttgtaatggacgtggaaacacatccggcagccacattgtaaaccatctggtg
agagcaaagtccaaggaggtgaccctgcataaagatggccctcttggagaaacggtgctt
gagtgctacaactgtggctgtcgcaacgtcttcctgctgggcttcatccctgccaaagcc
gactcagtagtggtgttgctgtgcaggcagccatgtgccagccagagcagcctgaaggac
atcaactgggacagctcacagtggcagccgctcatccaggatcgctgcttcctgtcctgg
ctggtcaaaatcccctcagagcaggagcagctcagggcccgtcagatcaccgcccagcag
atcaacaagctggaagaactctggaaggaaaatcccactgcaaccttggaggacctggag
aagcctggtgtggatgaggagcctcaacatgtgttgctccgctatgaggatgcctaccag
taccagaacatctttggtcctcttgtaaagctggaggccgactacgataagaaactcaaa
gagtcccagactcaagacaacattacggtcagatgggacttgggcctgaacaaaaagagg
attgcttatttcactcttcccaagacggattcagacatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggcccctccatggaaaggcattggacatgtcatc
aaagtccctgataactacggtgatgagattgccatagagctgaggagcagtgctggagct
ccagtggagatcccacacaactttcaggtcgactttgtgtggaagtccacttcctttgac
aggatgcagagcgccctgaaaacatttgcagtggatgagacttcagtttctggttacatc
taccacaaactgctgggacacgaggttgaggatgtggtcatcaagtgccagctgcccaaa
cgcttcactgctcaaggcctgcccgaccttaaccactcacaggtgtatgctgtgaagaca
gtgctgcagcgtccgctcagtctgatccagggtcctcctggcacagggaagacggtaacc
tctgccaccatcgtctaccacctggctagacagggcaacggcccagtgctggtgtgtgct
cccagtaacattgcagtcgaccagctgacagagaagatccaccagacggggctcaaggtg
gtgaggctgtgtgccaagagtagggaggccattgactcacctgtgtccttcctggctctg
cacaaccagacccgcaacatggacagtatgccagaacttcagaagctccaacagctgaag
gacgagactggagagctatcctcctcagacgagaagcgctacagagctctgagacgcact
gccgagagggagctgctcatgaacgcagatgtgatctgctgtacctgtgttggggcgggt
gatcctcgtctggccaagatgcagttccgctcaatcctgattgatgagagcacccaggcc
accgagccagagtgcatggtgcctgtcgtcctgggggccaaacagttgattctggtcggt
gatcactgccagctgggcccagtagtgatgtgtaagaaggcagctaaagcaggtctgtcc
cagtctctgttcgagcgtctggtggttttgggcatccggccaatccgtctgcaggtccag
taccgcatgcacccggccctcagcgccttcccctccaacatcttctacgagggctccctg
cagaacggagtcactgccgcggaccgcgtgaagaaaggttttgacttccagtggccacag
cccgacaagcctatgttcttttatgtcacccaaggccaagaggaaattgcgagctctgga
acatcctatctcaacaggactgaagcagccaatgtggagaaaataaccacaaggttgctg
aaggctggagcaaaacccgatcagattggcatcattacgccctacgagggacagaggtcc
tacctggttcagtacatgcagttcagtggctccctccataccaaactctaccaggaggtg
gaaatagccagtgtggacgcctttcaaggcagagagaaggacttcatcatcctgtcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaacgatcccagacgcctcaatgtg
gctctcactagggcgaggtatggtgtgatcatcgtgggaaaccccaaggccctgtccaag
cagcctctgtggaaccacctactgaactactacaaggagcagaaggtcctggttgaaggc
ccccttaacaatctgagagagagcctcatgcaattcagcaagccccgcaagcttgtcaac
accatcaaccctgggggtcgattcatgagcacagccatgtatgatgccagagaggccctc
attcctggatctgtttatgaccgcagcagcaacggacgtacatccaatatgtatttccag
acccatgaccagatcggtatgattggcacaggccccagtcccatgacctccatgaacatt
cccatccccttcaaccttgtgatgcccccaatacctccacctgggtacatgggacaggtc
aatggaccctcagctggtcgtggtggaggtatgaagggcaaggcaggcagtggaggaggc
ggcgggactcgaggtggccgtcaaagaaaccgtggcaacatggggaaccacagcggaggg
aacggagaccgcgggcagcatggaggccacatgagtggcagccaggccagccaggacctg
ggctcccagcccttctcgcaggggcctctgacgcagggctacatcaacatgagccagccg
tcacagatgagccagcctgggctctcccagcctgaactctcacaggacagttaccttgga
gacgagttcaagtcccagattgatgtggctttgtcccaggactccacctaccagggggag
cgggcctaccaacacggtggtgtgactggactgtcccagtactag
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integrated database retrieval system
