Pempheris klunzingeri: 139214630
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Entry
139214630 CDS
T11454
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pklu Pempheris klunzingeri
Pathway
pklu03008
Ribosome biogenesis in eukaryotes
pklu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
139214630 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
139214630 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pklu03019
]
139214630 (xrn1)
03009 Ribosome biogenesis [BR:
pklu03009
]
139214630 (xrn1)
03016 Transfer RNA biogenesis [BR:
pklu03016
]
139214630 (xrn1)
03036 Chromosome and associated proteins [BR:
pklu03036
]
139214630 (xrn1)
Messenger RNA biogenesis [BR:
pklu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139214630 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
139214630 (xrn1)
Ribosome biogenesis [BR:
pklu03009
]
Eukaryotic type
Pre-60S particles
RNases
139214630 (xrn1)
Transfer RNA biogenesis [BR:
pklu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
139214630 (xrn1)
Chromosome and associated proteins [BR:
pklu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
139214630 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
139214630
NCBI-ProteinID:
XP_070701630
LinkDB
All DBs
Position
15:15161921..15181347
Genome browser
AA seq
1695 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIVKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALDKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKLSNDKLWQNVRVYLSGHETPGEGEHK
IMEFIRSENSKPGHNPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSALRNHIGCDYDLERIIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYKTYISVLPSLGGYLNENGHLNLRNFEKYLEKLAEFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEKEAASKDSSMNEDSARAQAALSSSGKVAGEGKGAAGDDEE
EEDDMFETEFRQYKRTYYMTKIGVDVVSDEFLAKQAKCYVEGIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIKNISGLKLTFDLEKPFMPFQQLLAVLPAASMSLLPEAYRHLMTSESSP
IIEYYPLDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMDSCNHKLTKAEKTRNCHTECAV
YTYDHEADFAYNSSLPQVFPDIIHCHVKKADIPMDAWHVRLDHVGRSVDRSALYFCGFPT
LQHIKHKFCKKKSGVVVFQQSSRGENMMLEILPSQEEEVVCDDVAALVLGNSVFVNWPHL
EEARIVAVSDGDVKFCLEEPPGVQRVYDRPTTPPPTKVICLSDKEQKDWVKDVQGLTEHF
VKRKGIVVNETTVVLYGQLLTGRKYVPKANGVVELEKQWAKQVLPFAYQTVVKDIKAFYS
SLTCFKSLDELFPPATTVFMVGNPYYGAMGEVQDSSDVIKDGRVRVVFNVPHEPQLEPLI
QNQHKYCVKYSPGYVLASRLGITSYLVSRFSGSIFIGRGSKKNPCGEQKANVGLNLKFNK
KNEEVPGYTKRTEKEWVYSAAVEELLAEYLDRFSEVFNSVSKNSHDDVFYEDDIWPGLDQ
NGAEKVAEITSWLKSHPVSSVSRTSCDLQVLDTAIVEKIEEAVEKVKVKKSTKKVRVTVK
PHLLFRPLEQQQGVVPDPDAEYRLFDRVVNTRESFTVPLGLRGTVIGIKGAEREAEVLYE
VLFDEEFAGGLNIRCTSPRCYRLPPCALINLSHGARVDQTSHKLTAIVKPQPAAASNFNS
QRQLAGLNHSPRSPFIPTQHNNKHGVVKAASQGNRNSPSKGLIQKQQAKGKEEYSNVWQT
LQSSGPPQKPPAHWQNNVPAGSIRLLKKNEDANSLLPQQNTTNKTTTEFEDLIASLKIST
GSQQTPPPPAPPQAPIQSDGPLSPQSFAMKGTLMLKEMLKIDGSGKGSPSSQESGRMGDS
APGGQGQSRRRSSKKLAANMNAPHSDSNNLSNAVQNSRVSELACVCVALGMAPPEFSFIR
NRQGLVVCQAKLSNGLMVHGPQCQSENDAKEKAAFFALQRLNSVGSGFPLPPPLYPGVGQ
IRPPPIGAMNPVFNQQGGLLLPPQGYAPAPMWGMPLPPHHHHQTQPFYGTAGTFPGAARP
QPATTVPIGSHNQFIPLQVTKKRVSANKKNQETREFYSAAHTVARNQSQKAQHQPSGQSQ
AQNETQKFDQRHQHAANSNPSSSSPGPADAASATSAALHTPPRQNAPATGHTPGSASKRK
HRKLAVNFEAAKVSE
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccgaaattttaccgatggatttcggagcgttatccgtgtctcagtgaagtt
gtcaaggaacatcagattccagaatttgacaatctctatctggacatgaatgggatcatc
caccagtgctcccaccccaatgacgaggatgtccactttcgcatttctgaggagaagatt
tttgccgacatcttccattacttggaggtgctcttcaggatcgtcaagcctcgcaaggtc
ttcttcatggcggtggacggcgtagcgccaagggcaaagatgaaccagcagagaggacga
agattcaggtctgccaaagaagcagaggacaagataaaaaaagctctggataaaggagag
gtgcttcccacagaggctcgcttcgactccaactgtatcactcctggcactgacttcatg
gcaagactccaagagcagctaaagtattttgtccacaacaagctctccaacgacaagcta
tggcagaatgtcagagtctacctgtcgggtcacgagactccaggggagggagaacataag
atcatggagtttattcgctctgagaacagtaaaccgggtcacaaccccaacacccgacac
tgcctgtatggcctggatgctgacctgatcatgttgggtttaaccagccatgagccaaac
ttttccctgctcagagaagaagtccgctttggagggaagaaatcccagaaaaggataacg
gctccagaggagacaacctttcacttgcttcacttgtctctgatgagggaatacattgac
tatgagttctctgcgctcaggaatcacattggttgtgattatgacttggagcgaataata
gacgactggattctaatgggcttcctagtgggaaacgatttcatcccccacctccctcat
cttcacatcaaccacgatgctttgccgttgctttacaagacctacatcagtgtccttccc
agcttggggggttatctgaacgagaacggtcatctaaacctcagaaactttgagaaatac
ctggaaaagcttgctgagtttgaccgggaacatttcagtgaggtgtttgtggacctgaag
tggtttgagagtaaagttggtaataagtatctgaacgaggcggccggattggcagcagaa
aaggaagctgccagcaaagacagcagcatgaatgaggattctgcccgcgctcaggcagct
ctgagctcatcaggaaaagtggctggagaaggaaaaggagcagcaggagacgatgaggaa
gaggaggacgatatgtttgaaactgagtttaggcagtacaagcgcacatactatatgacc
aagattggtgtggatgtcgtgtctgatgagttcctagccaagcaggccaagtgctatgtg
gaaggcatccagtggatcctccactactattaccacggggttcagtcctggagctggtac
tacccctaccactacgctcccttcctgtcagacatcaagaatatatcggggctaaagttg
acctttgaccttgagaaacccttcatgcccttccagcagctgttggccgtcctgcctgct
gccagcatgtcgctgctgcctgaggcttacaggcacctgatgaccagtgaaagttcacct
attattgagtactaccctcttgacttcaaaacggacctcaacggcaagcagcaggagtgg
gaggccgtggttctgattcccttcatagatgagaggtgtttactagcagccatggattcc
tgtaatcacaagctgactaaagcagagaagaccaggaactgtcacacagagtgtgcagtc
tacacatatgaccatgaagcggactttgcatacaactccagcctgcctcaggtgttccct
gacatcatccactgccatgtcaagaaagcagacatccctatggatgcctggcatgtacgg
ttggaccacgttggacgatctgtcgaccgctcagctctgtacttctgtggcttccccaca
ctgcagcacatcaaacacaagttttgtaagaagaagagtggtgtggtcgtgttccagcag
agcagcagaggggagaacatgatgctggagatcctccccagccaggaagaagaagtggtg
tgtgatgatgttgctgcactcgtgttggggaactctgtgttcgtcaactggccacatcta
gaggaagctcgcatcgttgcagtgtcagatggagacgtcaagttttgtctagaggaaccg
cctggtgtccaaagagtatacgaccggcccaccactcctcctcccaccaaagtcatctgc
ctgtctgacaaggagcagaaagactgggtgaaggatgtccagggactcactgaacatttc
gtaaagaggaaaggtatcgtggttaatgagacgactgtggttctgtacggccagctgctg
acaggaaggaaatacgtccctaaagccaacggggtggtggaactagagaaacagtgggcc
aagcaggtcctccctttcgcctatcagacggtggttaaggacatcaaggccttttactcg
tccctgacctgcttcaagagcctagatgaactctttcctccagcaactactgtcttcatg
gtggggaacccttactacggtgccatgggcgaggtgcaagattctagcgacgtcatcaaa
gatggacgggtacgagtggtcttcaacgtgccgcatgaaccacagctggagcccttaatc
cagaaccagcataagtactgtgtgaagtacagtcccggatacgttctggcatctcgtctt
ggcatcaccagctacctcgtctcccgcttctcaggaagcatcttcattggcagaggctcg
aagaagaatccctgtggggaacaaaaagctaacgttggcctgaacctgaagttcaacaag
aagaatgaggaggttcctggatacactaagagaactgaaaaagagtgggtctactctgct
gctgtggaggaactgctagccgaatacctggacagattttctgaggtattcaacagtgtg
tccaaaaacagtcatgatgatgttttctatgaagatgacatctggcctggattggaccag
aatggtgcggagaaagtcgctgaaatcacctcatggctcaaaagtcacccggtgagctct
gtcagcaggacgtcatgtgacctacaggtgctggacactgccatcgtggagaagattgag
gaggcagtggagaaagtcaaggtgaagaagagcaccaagaaagtccgtgtgactgtcaag
cctcatctcctgttcaggcccctggagcagcagcagggggtggttccagacccggatgca
gagtatcgcctctttgacagagttgtcaacaccagggagagcttcaccgtcccactggga
ctgagaggaaccgtcatcggcatcaaaggagcggaacgtgaggcagaggttctctatgaa
gtgctttttgatgaagaatttgctggaggtctgaacatcaggtgtacatcaccacgttgt
taccgcctccccccctgcgctctcattaacctttcccacggagcccgagtggatcagacc
tcccacaaactcaccgccatcgttaaacctcagcccgccgcagcatcaaacttcaactcc
cagcgccagctggctggcctgaaccactccccacgctcacccttcatacccacacagcat
aacaacaaacacggtgtggtgaaggcagcttcccagggcaacaggaactctccctctaag
gggctcatccagaaacaacaggccaagggtaaagaggagtacagtaatgtgtggcaaact
ctgcagagctctggccctcctcaaaaacctcctgcccactggcaaaataatgtcccagct
ggcagcatcagactgttgaagaaaaatgaagacgccaactcccttttaccacagcagaac
acgaccaataagactacgactgagtttgaggacctgatagccagtctcaagatctccacg
ggtagccagcagaccccaccccctcctgctcctccacaagcccccatccagtcagatggg
ccgttgtccccgcagtcgttcgccatgaagggaaccctgatgctgaaggagatgctaaag
attgacggctctggaaaaggaagtccctcttcccaggagagtgggaggatgggagactca
gcccccggaggtcaggggcagagcaggagacgatcgtccaagaaactggcagcaaatatg
aacgccccccacagtgactccaacaacctatccaacgccgtgcagaacagtagggtgtcg
gagctggcgtgcgtctgcgtggcgttaggaatggccccacccgagttcagcttcatacgc
aacagacagggtctagtggtgtgtcaggccaagctgtccaatgggctgatggttcatggc
ccacagtgccaatctgaaaacgatgccaaggagaaagcagctttctttgccctccagaga
ctgaactccgtgggatcgggcttccccctcccacctcctttatacccaggagtgggccag
atacgacccccacccataggagccatgaaccctgtcttcaaccaacaaggtggtttgctg
ttgcctccccagggttacgcccctgcccccatgtgggggatgccgttgcctccccaccac
caccaccaaacccagccgttctacggaacagcaggaaccttccccggcgccgcccgcccc
cagcctgcaaccacagtgcccatcggctcacacaaccagtttattccattacaggtgacg
aagaaacgagtctcagccaacaagaagaaccaggagactcgagagttttacagcgccgcc
cacaccgtggccagaaaccaatcacagaaagcccagcaccagccctccggccaatcacag
gctcagaacgaaacccagaaattcgaccagcgccaccaacacgccgccaacagcaacccc
tcctcgtccagtcccggccccgcagacgcagcttccgcgacatcagcagccctgcacacg
ccccctcgccaaaacgcgccagcaacaggccacacccccggctccgcctccaagaggaag
cacagaaagctggctgtcaactttgaggcagctaaagtctctgagtga
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integrated database retrieval system
